Click here to switch to the map view.

The map label for this gene is yjiM [H]

Identifier: 220903822

GI number: 220903822

Start: 657089

End: 658228

Strand: Reverse

Name: yjiM [H]

Synonym: Ddes_0545

Alternate gene names: 220903822

Gene position: 658228-657089 (Counterclockwise)

Preceding gene: 220903823

Following gene: 220903820

Centisome position: 22.91

GC content: 57.02

Gene sequence:

>1140_bases
ATGAAGTGCGCCAGTTTTGACAGAATCACCACGGCCTTTGAAAAAAACGTGCTCAACCTTACGGAAGCCAAGCAGAACGG
CAGGAAAGTGGTGGGCCAGTTCTGCCTGTATTCGCCATCTGAAATAGCCCTGGCTGCCGGGGCTATTCCCGTGTCTCTCT
GCGGCACAAAAAACGACTCCATACCCGCCGCCGAGGAGGTGCTGCCCCGCTCTCTCTGCCCGCTGATCAAAAGCAGCTTC
GGCTTTGCCCTCAATGACAGCTGCCCCTATCTGGCGGCCGCAGACATTGTGGTGGCCGACACCACCTGTGACGGCAAGAA
AAAGATGTATGAACTGCTTGCCCCATACAAACCTGTGGCCCTGCTGCAACTGCCGCAGATTCAGGACAGCGACGCCCTGT
CCTACTGGCGCAAGCAGTTTGAAGGACTGGTGCACCGCCTTGAACAGGAATTCGGCGTCAGGATCACCGATGCCAAACTG
CGCGAAGCCATTGCACTGATGAACCGTGAACGGCTGGCGCTCAAGGCTGTCATGGATCTGGCGCAACGCAGGCCCTCGCC
TGTTACCGGCGTGGAACTGGTGGAAATTGCCTTTAAAACGTCCTTCTTTCCCGACAAGGAAGTGGGCATCGCCATGCTGG
AAGACCTGGCCCGGGAAATGGGCAGGCTGGCTGATGAAGGACAGGCGGCCTGCAGCCCCGAGGCTCCGCGCATTCTGCTT
ACGGGAGTTCCTGTGGGCCTTGGTTCGCACAAGGTCGTGCGCCTTATTGAGGAGTGTGGCGGCAGCGTTGTCTGTCTTGA
TAACTGCTCGGCCTATAAAAAAACCCGCGTCATGATGGAAGAAAACAGCGACCCGCTGACCGAAATGGCAAAACGCTATC
TGGACGTGCCCTGCGCCGTCATGTCGCCCAATCCGCACAGGTACGAGGCCTTGCGGCAGATGGCGGCGGATTTTTCGGCA
GATGCCGTGGTGGACCTTACATGGCAGGGCTGCCAGACCTATGCCGTTGAAGCCTGGACTCTGAAAAAATTTGTGCAGAG
CGACCTGGGACTGCCCTATCTGAATGTTGAAACAGACTACTCCGAAACAGATACCGAACAGCTCAAGGTGCGCGTTGAGG
CCTTTTTGGAAATGCTGTAG

Upstream 100 bases:

>100_bases
CCTGGGCGCTGCCCTGCTTGCAGCGCATCAGCTTGAAAAGAAACATCATGCCTAGCCGGCCCGGCAAAAGGGCCAAACCG
TAACCCAGCAAGGAGCGGAT

Downstream 100 bases:

>100_bases
GCGATGCCTTTCAGTACCGTTGCGCAAACATAAACCGCTGTGCGCAATCACCACGTGACGCTGTAAAAATGTTGCGGCAT
CTGTTCACAAAACATGAATG

Product: 2-hydroxyglutaryl-CoA dehydratase D-component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MKCASFDRITTAFEKNVLNLTEAKQNGRKVVGQFCLYSPSEIALAAGAIPVSLCGTKNDSIPAAEEVLPRSLCPLIKSSF
GFALNDSCPYLAAADIVVADTTCDGKKKMYELLAPYKPVALLQLPQIQDSDALSYWRKQFEGLVHRLEQEFGVRITDAKL
REAIALMNRERLALKAVMDLAQRRPSPVTGVELVEIAFKTSFFPDKEVGIAMLEDLAREMGRLADEGQAACSPEAPRILL
TGVPVGLGSHKVVRLIEECGGSVVCLDNCSAYKKTRVMMEENSDPLTEMAKRYLDVPCAVMSPNPHRYEALRQMAADFSA
DAVVDLTWQGCQTYAVEAWTLKKFVQSDLGLPYLNVETDYSETDTEQLKVRVEAFLEML

Sequences:

>Translated_379_residues
MKCASFDRITTAFEKNVLNLTEAKQNGRKVVGQFCLYSPSEIALAAGAIPVSLCGTKNDSIPAAEEVLPRSLCPLIKSSF
GFALNDSCPYLAAADIVVADTTCDGKKKMYELLAPYKPVALLQLPQIQDSDALSYWRKQFEGLVHRLEQEFGVRITDAKL
REAIALMNRERLALKAVMDLAQRRPSPVTGVELVEIAFKTSFFPDKEVGIAMLEDLAREMGRLADEGQAACSPEAPRILL
TGVPVGLGSHKVVRLIEECGGSVVCLDNCSAYKKTRVMMEENSDPLTEMAKRYLDVPCAVMSPNPHRYEALRQMAADFSA
DAVVDLTWQGCQTYAVEAWTLKKFVQSDLGLPYLNVETDYSETDTEQLKVRVEAFLEML
>Mature_379_residues
MKCASFDRITTAFEKNVLNLTEAKQNGRKVVGQFCLYSPSEIALAAGAIPVSLCGTKNDSIPAAEEVLPRSLCPLIKSSF
GFALNDSCPYLAAADIVVADTTCDGKKKMYELLAPYKPVALLQLPQIQDSDALSYWRKQFEGLVHRLEQEFGVRITDAKL
REAIALMNRERLALKAVMDLAQRRPSPVTGVELVEIAFKTSFFPDKEVGIAMLEDLAREMGRLADEGQAACSPEAPRILL
TGVPVGLGSHKVVRLIEECGGSVVCLDNCSAYKKTRVMMEENSDPLTEMAKRYLDVPCAVMSPNPHRYEALRQMAADFSA
DAVVDLTWQGCQTYAVEAWTLKKFVQSDLGLPYLNVETDYSETDTEQLKVRVEAFLEML

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0007 [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=377, Percent_Identity=42.9708222811671, Blast_Score=319, Evalue=2e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 41879; Mature: 41879

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCASFDRITTAFEKNVLNLTEAKQNGRKVVGQFCLYSPSEIALAAGAIPVSLCGTKNDS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCCCC
IPAAEEVLPRSLCPLIKSSFGFALNDSCPYLAAADIVVADTTCDGKKKMYELLAPYKPVA
CCCHHHHHHHHHHHHHHHHCCCEECCCCCCEEECCEEEEECCCCHHHHHHHHHCCCCCEE
LLQLPQIQDSDALSYWRKQFEGLVHRLEQEFGVRITDAKLREAIALMNRERLALKAVMDL
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
AQRRPSPVTGVELVEIAFKTSFFPDKEVGIAMLEDLAREMGRLADEGQAACSPEAPRILL
HHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
TGVPVGLGSHKVVRLIEECGGSVVCLDNCSAYKKTRVMMEENSDPLTEMAKRYLDVPCAV
EECCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCEEE
MSPNPHRYEALRQMAADFSADAVVDLTWQGCQTYAVEAWTLKKFVQSDLGLPYLNVETDY
ECCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
SETDTEQLKVRVEAFLEML
CCCCHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKCASFDRITTAFEKNVLNLTEAKQNGRKVVGQFCLYSPSEIALAAGAIPVSLCGTKNDS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCCCC
IPAAEEVLPRSLCPLIKSSFGFALNDSCPYLAAADIVVADTTCDGKKKMYELLAPYKPVA
CCCHHHHHHHHHHHHHHHHCCCEECCCCCCEEECCEEEEECCCCHHHHHHHHHCCCCCEE
LLQLPQIQDSDALSYWRKQFEGLVHRLEQEFGVRITDAKLREAIALMNRERLALKAVMDL
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
AQRRPSPVTGVELVEIAFKTSFFPDKEVGIAMLEDLAREMGRLADEGQAACSPEAPRILL
HHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
TGVPVGLGSHKVVRLIEECGGSVVCLDNCSAYKKTRVMMEENSDPLTEMAKRYLDVPCAV
EECCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCEEE
MSPNPHRYEALRQMAADFSADAVVDLTWQGCQTYAVEAWTLKKFVQSDLGLPYLNVETDY
ECCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
SETDTEQLKVRVEAFLEML
CCCCHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]