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The map label for this gene is yggS [C]

Identifier: 220903651

GI number: 220903651

Start: 451446

End: 452159

Strand: Direct

Name: yggS [C]

Synonym: Ddes_0372

Alternate gene names: 220903651

Gene position: 451446-452159 (Clockwise)

Preceding gene: 220903650

Following gene: 220903652

Centisome position: 15.71

GC content: 62.32

Gene sequence:

>714_bases
ATGGAACTGCTGGATCGCTATCACCGCGTGCTGGAAAGGCTGGACGCCGCCTGTGCCGCTGCCGGGCGGCCCAGGGAAGA
AGTCTCGCTTGTTGCCGTATCCAAACTGCACCCGGCCTGCGATGTGGCCGCCGTGGCCGCTGCGGGGCAGGTGGATTTTG
GTGAAAATTATGTGCAGGAAGCCCTGCAGAAACGTGAAGAGCTGGAAGCTGCCCCTGCAGCTTCTGCCCTTCATGTCCGC
TGGCATATGGTCGGCCACGTGCAAAGCCGCAAGGCCGGGCAGGTGGCCGGGGCCTTTGCGCTGGTACATACGCTTGATTC
GCGCAAGCTGGCCGACGCTTTTGAGCGGCGGCTGGCTGATGGCGAGGCCCGTCAGGCGGTGCTTTTTCAGGTGAATATTG
CCTCTGAACCGCAAAAAAGCGGCATCATGGCTGCAGATTTACCGGCTTTGGCCGATTATGTACTTGAGAGCTGCCCGCAT
CTTGATGTCCAGGGCCTCATGTGCCTGCCGCCGGTCTTTGATTCCGGCGATGCCGCACGGCCCCATTTTGCCCTCCTGCG
TGAACTGCGGGACGGCCTGCGCGCCCGCACCGGTCTGCCCTTGCCTGTCCTGTCTATGGGAATGAGCGGCGATTTTGAGG
CGGCCGTGACCGAAGGGGCCACCCTGGTACGCATCGGTACGGATATTTTCGGGCTGCGCCCGGCCAAAACCTAG

Upstream 100 bases:

>100_bases
GGGCGGCAAGGTGCATCTGGAACTGTGGGTCAAGGTGCGCGAGCACTGGACGGAAGACACGGCCTTTCTGCGCGACCTGG
GCCTTATGGCGGAGTAGGGT

Downstream 100 bases:

>100_bases
CCTCTGGCACAGTGTCTGCAATAGCTGTGGGGGCCGGTTTTTGCGGGTGGCGCGGAGGGATCCGGCTGCGCAGGTTTCGC
CCATAAAAATCGCACGCGGC

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MELLDRYHRVLERLDAACAAAGRPREEVSLVAVSKLHPACDVAAVAAAGQVDFGENYVQEALQKREELEAAPAASALHVR
WHMVGHVQSRKAGQVAGAFALVHTLDSRKLADAFERRLADGEARQAVLFQVNIASEPQKSGIMAADLPALADYVLESCPH
LDVQGLMCLPPVFDSGDAARPHFALLRELRDGLRARTGLPLPVLSMGMSGDFEAAVTEGATLVRIGTDIFGLRPAKT

Sequences:

>Translated_237_residues
MELLDRYHRVLERLDAACAAAGRPREEVSLVAVSKLHPACDVAAVAAAGQVDFGENYVQEALQKREELEAAPAASALHVR
WHMVGHVQSRKAGQVAGAFALVHTLDSRKLADAFERRLADGEARQAVLFQVNIASEPQKSGIMAADLPALADYVLESCPH
LDVQGLMCLPPVFDSGDAARPHFALLRELRDGLRARTGLPLPVLSMGMSGDFEAAVTEGATLVRIGTDIFGLRPAKT
>Mature_237_residues
MELLDRYHRVLERLDAACAAAGRPREEVSLVAVSKLHPACDVAAVAAAGQVDFGENYVQEALQKREELEAAPAASALHVR
WHMVGHVQSRKAGQVAGAFALVHTLDSRKLADAFERRLADGEARQAVLFQVNIASEPQKSGIMAADLPALADYVLESCPH
LDVQGLMCLPPVFDSGDAARPHFALLRELRDGLRARTGLPLPVLSMGMSGDFEAAVTEGATLVRIGTDIFGLRPAKT

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=230, Percent_Identity=36.5217391304348, Blast_Score=124, Evalue=8e-29,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=39.4849785407725, Blast_Score=129, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17533025, Length=232, Percent_Identity=36.6379310344828, Blast_Score=128, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6319435, Length=251, Percent_Identity=33.8645418326693, Blast_Score=118, Evalue=7e-28,
Organism=Drosophila melanogaster, GI45550861, Length=241, Percent_Identity=39.0041493775934, Blast_Score=140, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25437; Mature: 25437

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLDRYHRVLERLDAACAAAGRPREEVSLVAVSKLHPACDVAAVAAAGQVDFGENYVQE
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHH
ALQKREELEAAPAASALHVRWHMVGHVQSRKAGQVAGAFALVHTLDSRKLADAFERRLAD
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
GEARQAVLFQVNIASEPQKSGIMAADLPALADYVLESCPHLDVQGLMCLPPVFDSGDAAR
CCCCEEEEEEEECCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCC
PHFALLRELRDGLRARTGLPLPVLSMGMSGDFEAAVTEGATLVRIGTDIFGLRPAKT
HHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHCCCEEEEECCHHHCCCCCCC
>Mature Secondary Structure
MELLDRYHRVLERLDAACAAAGRPREEVSLVAVSKLHPACDVAAVAAAGQVDFGENYVQE
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHH
ALQKREELEAAPAASALHVRWHMVGHVQSRKAGQVAGAFALVHTLDSRKLADAFERRLAD
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
GEARQAVLFQVNIASEPQKSGIMAADLPALADYVLESCPHLDVQGLMCLPPVFDSGDAAR
CCCCEEEEEEEECCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCC
PHFALLRELRDGLRARTGLPLPVLSMGMSGDFEAAVTEGATLVRIGTDIFGLRPAKT
HHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHCCCEEEEECCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]