Click here to switch to the map view.

The map label for this gene is pqqE [H]

Identifier: 220903570

GI number: 220903570

Start: 344349

End: 345533

Strand: Reverse

Name: pqqE [H]

Synonym: Ddes_0289

Alternate gene names: 220903570

Gene position: 345533-344349 (Counterclockwise)

Preceding gene: 220903571

Following gene: 220903569

Centisome position: 12.03

GC content: 58.4

Gene sequence:

>1185_bases
ATGATTGGCATTTCCAAGCTGTACTGTGGTCAGGTGGAGCCTTCGGACGCCCTGCGTTATGGCCGTGAGTCGGGCAAGCT
GCCCTCCCACCTGCTGCAGTTTTCCAAGGACAAGAAGCCTGTGGTGGTCTGGAACATGACCCAGCGCTGCAACCTCAAAT
GCGTGCACTGTTATGCCCACGCCATTGAGGTGGACGGCACGGACGACATCAATACCCAGCAGGCCAAGGCCATGATCGAC
GATCTGGCCGCCTACGGCGCTCCGGTCATGCTTTTCTCCGGCGGCGAGCCGCTGGTACGCAAAGACCTGGTTGAACTGGC
AAGCCACGCCACGTCCAAGGGCATGCGGGCCGTCATCTCCACTAACGGAACCCTGATCACCAAGGAAAAAGCGCGCGAAC
TCAAGGCCGTGGGCCTCTCTTACGTGGGCATCTCCCTGGACGGCATGGAAGAAATACACGACAAGTTCCGCGCCGTACCC
GGCGCGTTCCGCAAGGCTCTGGAAGGCATCGCCAACTGCCAGGCCGAAGGTCTCAAGGTGGGCCTGCGCCTCACCATCAA
CAAGCGCAATGCCGGTGAAATTCCCGGTATTTTCCGTCTGCTCAAGGACATGGAAATTCCCCGCGCCTGTTTTTACCACC
TTGTCTACTCCGGCCGAGGTTCCGAACTTATCAAGGAAGACCTGGACCACGCGGAAACCCGTCAGGTGCTGGACCTCATC
ATGGATGAAACCCGCGCCCTGTTTGATGCGGGCAAGGGCAAGGAAATCCTTACTGTTGATAACCACGCCGACGGTCCCTA
TGTGTGGATGCGCCTCAAGCGCGAAGACCCCAAACGCGCGGAAGAAGTTTTTGAGCTGCTTCAATACAATGAAGGCAACA
GTTCCGGCCGGGGCATAGGCTGTATTTCCTGGGACGGAAAGGTGCATGCCGACCAGTTCTGGCGGAACCATGTGCTCGGC
AATGTGCTGGAGCGCCCGTTCTCGCAGATATGGGACGATCCCTCCATCGAACTGCTGCACAAGCTCAAGGACAAGAAAGC
CCACGTCAAGGGCCGCTGCGCCAAATGCCGGTTCCTGAACATCTGTGGCGGCAACTTCCGCGCCCGCGCCGAAGCCTATT
ATGATGACATATGGGCGCAGGATCCGGCCTGCTACCTGACTGATGAAGAAATCGGCCTGAAGTAG

Upstream 100 bases:

>100_bases
GGCAGGCCCGACATGGCCCAGGCAGGCGGCAACCAGCCTGAAGGGCTGGCCGAGGCCTTTGCCGCGCTGAAAAAATGTAT
CGAACAATAAGGACTGTGTG

Downstream 100 bases:

>100_bases
CTTCTTTTGTGAGGAGGCCCCTTGTTCAAAAAGGGGCCTCTTTCACATTTTCTGCCAGATTTTACAAGCGTTATTGCTAT
GATAGAGGCAGCCTGGCCTG

Product: Radical SAM domain-containing protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MIGISKLYCGQVEPSDALRYGRESGKLPSHLLQFSKDKKPVVVWNMTQRCNLKCVHCYAHAIEVDGTDDINTQQAKAMID
DLAAYGAPVMLFSGGEPLVRKDLVELASHATSKGMRAVISTNGTLITKEKARELKAVGLSYVGISLDGMEEIHDKFRAVP
GAFRKALEGIANCQAEGLKVGLRLTINKRNAGEIPGIFRLLKDMEIPRACFYHLVYSGRGSELIKEDLDHAETRQVLDLI
MDETRALFDAGKGKEILTVDNHADGPYVWMRLKREDPKRAEEVFELLQYNEGNSSGRGIGCISWDGKVHADQFWRNHVLG
NVLERPFSQIWDDPSIELLHKLKDKKAHVKGRCAKCRFLNICGGNFRARAEAYYDDIWAQDPACYLTDEEIGLK

Sequences:

>Translated_394_residues
MIGISKLYCGQVEPSDALRYGRESGKLPSHLLQFSKDKKPVVVWNMTQRCNLKCVHCYAHAIEVDGTDDINTQQAKAMID
DLAAYGAPVMLFSGGEPLVRKDLVELASHATSKGMRAVISTNGTLITKEKARELKAVGLSYVGISLDGMEEIHDKFRAVP
GAFRKALEGIANCQAEGLKVGLRLTINKRNAGEIPGIFRLLKDMEIPRACFYHLVYSGRGSELIKEDLDHAETRQVLDLI
MDETRALFDAGKGKEILTVDNHADGPYVWMRLKREDPKRAEEVFELLQYNEGNSSGRGIGCISWDGKVHADQFWRNHVLG
NVLERPFSQIWDDPSIELLHKLKDKKAHVKGRCAKCRFLNICGGNFRARAEAYYDDIWAQDPACYLTDEEIGLK
>Mature_394_residues
MIGISKLYCGQVEPSDALRYGRESGKLPSHLLQFSKDKKPVVVWNMTQRCNLKCVHCYAHAIEVDGTDDINTQQAKAMID
DLAAYGAPVMLFSGGEPLVRKDLVELASHATSKGMRAVISTNGTLITKEKARELKAVGLSYVGISLDGMEEIHDKFRAVP
GAFRKALEGIANCQAEGLKVGLRLTINKRNAGEIPGIFRLLKDMEIPRACFYHLVYSGRGSELIKEDLDHAETRQVLDLI
MDETRALFDAGKGKEILTVDNHADGPYVWMRLKREDPKRAEEVFELLQYNEGNSSGRGIGCISWDGKVHADQFWRNHVLG
NVLERPFSQIWDDPSIELLHKLKDKKAHVKGRCAKCRFLNICGGNFRARAEAYYDDIWAQDPACYLTDEEIGLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 44153; Mature: 44153

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGISKLYCGQVEPSDALRYGRESGKLPSHLLQFSKDKKPVVVWNMTQRCNLKCVHCYAH
CCCCCCHHCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEEE
AIEVDGTDDINTQQAKAMIDDLAAYGAPVMLFSGGEPLVRKDLVELASHATSKGMRAVIS
EEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEE
TNGTLITKEKARELKAVGLSYVGISLDGMEEIHDKFRAVPGAFRKALEGIANCQAEGLKV
CCCEEEEHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEE
GLRLTINKRNAGEIPGIFRLLKDMEIPRACFYHLVYSGRGSELIKEDLDHAETRQVLDLI
EEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
MDETRALFDAGKGKEILTVDNHADGPYVWMRLKREDPKRAEEVFELLQYNEGNSSGRGIG
HHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEE
CISWDGKVHADQFWRNHVLGNVLERPFSQIWDDPSIELLHKLKDKKAHVKGRCAKCRFLN
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
ICGGNFRARAEAYYDDIWAQDPACYLTDEEIGLK
ECCCCCHHHHHHHHHHHHCCCCCEEEECHHCCCC
>Mature Secondary Structure
MIGISKLYCGQVEPSDALRYGRESGKLPSHLLQFSKDKKPVVVWNMTQRCNLKCVHCYAH
CCCCCCHHCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEEE
AIEVDGTDDINTQQAKAMIDDLAAYGAPVMLFSGGEPLVRKDLVELASHATSKGMRAVIS
EEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEE
TNGTLITKEKARELKAVGLSYVGISLDGMEEIHDKFRAVPGAFRKALEGIANCQAEGLKV
CCCEEEEHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEE
GLRLTINKRNAGEIPGIFRLLKDMEIPRACFYHLVYSGRGSELIKEDLDHAETRQVLDLI
EEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
MDETRALFDAGKGKEILTVDNHADGPYVWMRLKREDPKRAEEVFELLQYNEGNSSGRGIG
HHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEE
CISWDGKVHADQFWRNHVLGNVLERPFSQIWDDPSIELLHKLKDKKAHVKGRCAKCRFLN
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
ICGGNFRARAEAYYDDIWAQDPACYLTDEEIGLK
ECCCCCHHHHHHHHHHHHCCCCCEEEECHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]