| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is 220903534
Identifier: 220903534
GI number: 220903534
Start: 296460
End: 298313
Strand: Direct
Name: 220903534
Synonym: Ddes_0253
Alternate gene names: NA
Gene position: 296460-298313 (Clockwise)
Preceding gene: 220903533
Following gene: 220903535
Centisome position: 10.32
GC content: 55.83
Gene sequence:
>1854_bases ATGGCCACAAAGCTGGAAAAACTCTTTTTCGCCATCGGCGTGCAAGATGGCGCTTCAAGCAAGATAGCCAAGCTGCAGGC CAATATCTCAACACTGGCTGACAGGGCTAAAGGCGCATTCATTGGCATGGGGTCTGCCGCTATGGGCTTGGCGGGAACGG CGCTCTCAATCAAAGCCCTTGCCGGGCCAGCGATTGAACTCAATCACGCCCTGGGCGAAGTGGAAGCCCTGGGCGTTGAT TCCAAAGGGCTCAAGATTCTGCAAACCGAGGCCGGGCGCTTTGCCATGCAATACGGCAAAAGCGCTACAGATGTAATAAA ATCGTCAACGGCCATTCAAGAGCAGGTCGACGGACTTACCGCCAAGGAGCTCGCAACGTTTACCACTGCCAGCAATGTGC TTGCTATGGCCAGCCGTTCCAGCGTGGACAGTATGACAGGGTATGTATCCAAGATGCATGGTCTGTTCGAGACTCAGGCT GGCAATATGGGGCAGGCCCGCTGGGCTGAACAGATGGTCGGGCAAACCGCTTTCGTAACCAAGGCTTTCAAGGCCAAAGG GGAAGAAATTTCTGCAGGCTTTGACGCCCTGGGCAACAGGGCTGTCCGGGCGGGGATATCCGCGGGCGAACAAATGGCGG TCATTGCCGCTGCCCAGCGAGACATGGGCGGCACGGCAGCAGGGGAGCAGTACAAGCTGCTGGTCGACAAGGCACGCACG GCAGGGCGCGCCCTGGGCGTGTCGTTCACCGACCAGCAGGGGCACATGCTCTCAATGGTTGATATTCTTGAACGTGTGCG GGCCAAATATGGCGACACCCTCACCACTGCGCAGCAGGCCAGCCTTGGCAAGGCTCTGGGCGATGAAAAGGCGGGGGCCT TCCTCAACACCCTGCTGTCCAAACAAGGCGAGCTCACCCGGGTTATCAAGGACGTTTCCACAGTTACAAACATGGACGGC GCCAGGGCATCGGCCCGACAGACAACAGATGCATTCCAACGGTTCGGCGCGTCCTTGGACTATGTGAAGACTAACTTCAT GCAAAAGCTGCTGCCCACCCTTGAGCGATGGACGCATAAAGCCAGTGACCACCTGGACACCATCAACAAGTGGATCACCA AGTATCCCAACGTGGCCCGCGTGATTGGCTATGTGGTGCTTGCCCTGCTGTCACTGGCTGCGGTTGTGGCTGTTGGCACT ATGGCCTTCAATCTGTTCAAGCTCGCAAGTATGCCTGTTGTTGGGGCAATCAAGGGCATCACATCCGTATTCAAATTGCT GACGGTGGCCATACGGGCCAACCCCATCGGCTTCCTTATCTGGGCGCTGATTATGTGCGTGATGTATTGGGATGAAGTTT CGGCGAGTATTGGAAAAGTGTGGGGGCTGTTACGCGGTTTCTTTGAATCCCTGGGGCCCATCGGCGCACCCTTTGTGCTG CTAATGGATACGCTGGCCGAGCGGTGGCGATTGTTTACCGACCTTTTTAAGGATTTTTCATGGACAAAGCTGTTGCGGTT CGCCATTGCCTCAGTCCTCACGCCTCTTGAGTTCTTTATAAATGCTATCGGCAAGCTGCTCTCGCACGTGCCCGGCATGA GTGAGAAGGCTGAAAAGCTTATGAACTGGAAGGCCGCAAATCTTGTCGATATGCCGTCAACCCCGGAAGATTTGGAAGTA GAAAGCCTCAAGCAGTCAAAAACCCTGCAGGTGCAGCAAGGGGGCGTCATGCCGTCTGGCGGCAGCTCGTCAACCATGAA CAACAATGGCCGCAGCGTAACCATTGGCGAGCAGCACATACACGTCGAAAACGCCACCGATATGAATGATTTTTGGACGA TGGGGCTTGGGTAA
Upstream 100 bases:
>100_bases ATTGCATGGCCGAAGCCGTTTTTCTAGAGCGCGATTATTGGGAAAAAATGAATATCGCCGTAGCCAACGGCATAGCTAAA GCCTTTAACCCCTGAAAACT
Downstream 100 bases:
>100_bases TGGCAGAATCCATGTACCGCGACCTGCTTATCGTTGACGACGACATATCCCTCGACGGCGGAGGGTATCCGGTCCTTGTC ACAGATCGTCCCTGCATCGC
Product: phage tail tape measure protein, TP901 family
Products: NA
Alternate protein names: Phage Tail Tape Measure Protein Core Region; Tail Tape Measure Protein; Tail Length Determinator; Phage Tail Length Determinator; Tail Tape Measure Protein Bacteriophage Origin; Phage-Related Tail Protein; Phage Tail Tape Measure Core Region; Prophage; Phage-Like Protein; Phage Gene; Phage Tail Tape Measure Family Protein; Phage Tail Tape Measure Protein Family; Phage Tail Protein; Phage Tail Tape Measure Protein Core Region
Number of amino acids: Translated: 617; Mature: 616
Protein sequence:
>617_residues MATKLEKLFFAIGVQDGASSKIAKLQANISTLADRAKGAFIGMGSAAMGLAGTALSIKALAGPAIELNHALGEVEALGVD SKGLKILQTEAGRFAMQYGKSATDVIKSSTAIQEQVDGLTAKELATFTTASNVLAMASRSSVDSMTGYVSKMHGLFETQA GNMGQARWAEQMVGQTAFVTKAFKAKGEEISAGFDALGNRAVRAGISAGEQMAVIAAAQRDMGGTAAGEQYKLLVDKART AGRALGVSFTDQQGHMLSMVDILERVRAKYGDTLTTAQQASLGKALGDEKAGAFLNTLLSKQGELTRVIKDVSTVTNMDG ARASARQTTDAFQRFGASLDYVKTNFMQKLLPTLERWTHKASDHLDTINKWITKYPNVARVIGYVVLALLSLAAVVAVGT MAFNLFKLASMPVVGAIKGITSVFKLLTVAIRANPIGFLIWALIMCVMYWDEVSASIGKVWGLLRGFFESLGPIGAPFVL LMDTLAERWRLFTDLFKDFSWTKLLRFAIASVLTPLEFFINAIGKLLSHVPGMSEKAEKLMNWKAANLVDMPSTPEDLEV ESLKQSKTLQVQQGGVMPSGGSSSTMNNNGRSVTIGEQHIHVENATDMNDFWTMGLG
Sequences:
>Translated_617_residues MATKLEKLFFAIGVQDGASSKIAKLQANISTLADRAKGAFIGMGSAAMGLAGTALSIKALAGPAIELNHALGEVEALGVD SKGLKILQTEAGRFAMQYGKSATDVIKSSTAIQEQVDGLTAKELATFTTASNVLAMASRSSVDSMTGYVSKMHGLFETQA GNMGQARWAEQMVGQTAFVTKAFKAKGEEISAGFDALGNRAVRAGISAGEQMAVIAAAQRDMGGTAAGEQYKLLVDKART AGRALGVSFTDQQGHMLSMVDILERVRAKYGDTLTTAQQASLGKALGDEKAGAFLNTLLSKQGELTRVIKDVSTVTNMDG ARASARQTTDAFQRFGASLDYVKTNFMQKLLPTLERWTHKASDHLDTINKWITKYPNVARVIGYVVLALLSLAAVVAVGT MAFNLFKLASMPVVGAIKGITSVFKLLTVAIRANPIGFLIWALIMCVMYWDEVSASIGKVWGLLRGFFESLGPIGAPFVL LMDTLAERWRLFTDLFKDFSWTKLLRFAIASVLTPLEFFINAIGKLLSHVPGMSEKAEKLMNWKAANLVDMPSTPEDLEV ESLKQSKTLQVQQGGVMPSGGSSSTMNNNGRSVTIGEQHIHVENATDMNDFWTMGLG >Mature_616_residues ATKLEKLFFAIGVQDGASSKIAKLQANISTLADRAKGAFIGMGSAAMGLAGTALSIKALAGPAIELNHALGEVEALGVDS KGLKILQTEAGRFAMQYGKSATDVIKSSTAIQEQVDGLTAKELATFTTASNVLAMASRSSVDSMTGYVSKMHGLFETQAG NMGQARWAEQMVGQTAFVTKAFKAKGEEISAGFDALGNRAVRAGISAGEQMAVIAAAQRDMGGTAAGEQYKLLVDKARTA GRALGVSFTDQQGHMLSMVDILERVRAKYGDTLTTAQQASLGKALGDEKAGAFLNTLLSKQGELTRVIKDVSTVTNMDGA RASARQTTDAFQRFGASLDYVKTNFMQKLLPTLERWTHKASDHLDTINKWITKYPNVARVIGYVVLALLSLAAVVAVGTM AFNLFKLASMPVVGAIKGITSVFKLLTVAIRANPIGFLIWALIMCVMYWDEVSASIGKVWGLLRGFFESLGPIGAPFVLL MDTLAERWRLFTDLFKDFSWTKLLRFAIASVLTPLEFFINAIGKLLSHVPGMSEKAEKLMNWKAANLVDMPSTPEDLEVE SLKQSKTLQVQQGGVMPSGGSSSTMNNNGRSVTIGEQHIHVENATDMNDFWTMGLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66102; Mature: 65971
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATKLEKLFFAIGVQDGASSKIAKLQANISTLADRAKGAFIGMGSAAMGLAGTALSIKAL CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHCCHHHHHHHH AGPAIELNHALGEVEALGVDSKGLKILQTEAGRFAMQYGKSATDVIKSSTAIQEQVDGLT CCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCH AKELATFTTASNVLAMASRSSVDSMTGYVSKMHGLFETQAGNMGQARWAEQMVGQTAFVT HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHH KAFKAKGEEISAGFDALGNRAVRAGISAGEQMAVIAAAQRDMGGTAAGEQYKLLVDKART HHHHHCCCHHHCCHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH AGRALGVSFTDQQGHMLSMVDILERVRAKYGDTLTTAQQASLGKALGDEKAGAFLNTLLS CCHHCCCEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH KQGELTRVIKDVSTVTNMDGARASARQTTDAFQRFGASLDYVKTNFMQKLLPTLERWTHK CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ASDHLDTINKWITKYPNVARVIGYVVLALLSLAAVVAVGTMAFNLFKLASMPVVGAIKGI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH TSVFKLLTVAIRANPIGFLIWALIMCVMYWDEVSASIGKVWGLLRGFFESLGPIGAPFVL HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LMDTLAERWRLFTDLFKDFSWTKLLRFAIASVLTPLEFFINAIGKLLSHVPGMSEKAEKL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH MNWKAANLVDMPSTPEDLEVESLKQSKTLQVQQGGVMPSGGSSSTMNNNGRSVTIGEQHI HCCHHCCEECCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCEE HVENATDMNDFWTMGLG EECCCCCCHHHHCCCCC >Mature Secondary Structure ATKLEKLFFAIGVQDGASSKIAKLQANISTLADRAKGAFIGMGSAAMGLAGTALSIKAL CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHCCHHHHHHHH AGPAIELNHALGEVEALGVDSKGLKILQTEAGRFAMQYGKSATDVIKSSTAIQEQVDGLT CCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCH AKELATFTTASNVLAMASRSSVDSMTGYVSKMHGLFETQAGNMGQARWAEQMVGQTAFVT HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHH KAFKAKGEEISAGFDALGNRAVRAGISAGEQMAVIAAAQRDMGGTAAGEQYKLLVDKART HHHHHCCCHHHCCHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH AGRALGVSFTDQQGHMLSMVDILERVRAKYGDTLTTAQQASLGKALGDEKAGAFLNTLLS CCHHCCCEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH KQGELTRVIKDVSTVTNMDGARASARQTTDAFQRFGASLDYVKTNFMQKLLPTLERWTHK CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ASDHLDTINKWITKYPNVARVIGYVVLALLSLAAVVAVGTMAFNLFKLASMPVVGAIKGI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH TSVFKLLTVAIRANPIGFLIWALIMCVMYWDEVSASIGKVWGLLRGFFESLGPIGAPFVL HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LMDTLAERWRLFTDLFKDFSWTKLLRFAIASVLTPLEFFINAIGKLLSHVPGMSEKAEKL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH MNWKAANLVDMPSTPEDLEVESLKQSKTLQVQQGGVMPSGGSSSTMNNNGRSVTIGEQHI HCCHHCCEECCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCEE HVENATDMNDFWTMGLG EECCCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA