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The map label for this gene is ydhO [H]

Identifier: 220903307

GI number: 220903307

Start: 27922

End: 28419

Strand: Reverse

Name: ydhO [H]

Synonym: Ddes_0021

Alternate gene names: 220903307

Gene position: 28419-27922 (Counterclockwise)

Preceding gene: 220903308

Following gene: 220903306

Centisome position: 0.99

GC content: 60.44

Gene sequence:

>498_bases
ATGAAAGGAATGACCGACATACATATTTTTTCAAAGCCGTGGGCTGCGCTGCTCATGCTCGCTTTTTTTCTGCTTGCCGG
GTGCGGCCTGCAACGTCCGGTAGATCCCGGTCCAGCTCCGGAGTCCGCCCACAAGGTAGTGCGCACGGCCTACAGCCAGA
TGGGGAAAAAATACCGTTCCGGCGGCGCCTCGCCGCAAAAGGGTTTTGACTGCTCCGGACTCATCTGGTGGGTCTACAAA
CAGAACGGCTACAAGGTTCCCCGCATTACCGTGGACCAAGCCAAGACCGGGTATGCCGTGCCCAAGGATCAGGCGCGGCC
CGGAGACATCGTTGTCTTCCGTACCGGCTCAAGCCCGCGCGGCCTGCATACCGGCATCTACGCCGGGGGCGACAGCTTTA
TCCACAGCCCGCGCCGGGGTGAAAAGGTGCGTATGGAAAGCATAACCATCCCCTACTGGCGCAGCAAACTCATCGCCGTG
CGCCGTGTGGTGCGCTGA

Upstream 100 bases:

>100_bases
TAACATTGCGGGTTATCAAGTATTTTGCCCTGTTGCCATAAAAGGCATGGGTTGCACAGAAAACCACCTGCCCGCAAGGG
TCTCTGTGCATGAGGCTGCC

Downstream 100 bases:

>100_bases
CGGCCCGACTGGCGAGGTCTATGAATGCAGGCCGCAAGCCCCTAGCAGGCGGCCTGCCTCCCCAGCCGCCTCACATGCGG
CGGTGAGCAGTCAACGGCAC

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MKGMTDIHIFSKPWAALLMLAFFLLAGCGLQRPVDPGPAPESAHKVVRTAYSQMGKKYRSGGASPQKGFDCSGLIWWVYK
QNGYKVPRITVDQAKTGYAVPKDQARPGDIVVFRTGSSPRGLHTGIYAGGDSFIHSPRRGEKVRMESITIPYWRSKLIAV
RRVVR

Sequences:

>Translated_165_residues
MKGMTDIHIFSKPWAALLMLAFFLLAGCGLQRPVDPGPAPESAHKVVRTAYSQMGKKYRSGGASPQKGFDCSGLIWWVYK
QNGYKVPRITVDQAKTGYAVPKDQARPGDIVVFRTGSSPRGLHTGIYAGGDSFIHSPRRGEKVRMESITIPYWRSKLIAV
RRVVR
>Mature_165_residues
MKGMTDIHIFSKPWAALLMLAFFLLAGCGLQRPVDPGPAPESAHKVVRTAYSQMGKKYRSGGASPQKGFDCSGLIWWVYK
QNGYKVPRITVDQAKTGYAVPKDQARPGDIVVFRTGSSPRGLHTGIYAGGDSFIHSPRRGEKVRMESITIPYWRSKLIAV
RRVVR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=115, Percent_Identity=38.2608695652174, Blast_Score=90, Evalue=7e-20,
Organism=Escherichia coli, GI1786421, Length=115, Percent_Identity=36.5217391304348, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788501, Length=111, Percent_Identity=38.7387387387387, Blast_Score=82, Evalue=1e-17,
Organism=Escherichia coli, GI1788001, Length=142, Percent_Identity=32.3943661971831, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 18308; Mature: 18308

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGMTDIHIFSKPWAALLMLAFFLLAGCGLQRPVDPGPAPESAHKVVRTAYSQMGKKYRS
CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GGASPQKGFDCSGLIWWVYKQNGYKVPRITVDQAKTGYAVPKDQARPGDIVVFRTGSSPR
CCCCCCCCCCCCCEEEEEEECCCEECCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCC
GLHTGIYAGGDSFIHSPRRGEKVRMESITIPYWRSKLIAVRRVVR
CCCCEEEECCHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKGMTDIHIFSKPWAALLMLAFFLLAGCGLQRPVDPGPAPESAHKVVRTAYSQMGKKYRS
CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GGASPQKGFDCSGLIWWVYKQNGYKVPRITVDQAKTGYAVPKDQARPGDIVVFRTGSSPR
CCCCCCCCCCCCCEEEEEEECCCEECCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCC
GLHTGIYAGGDSFIHSPRRGEKVRMESITIPYWRSKLIAVRRVVR
CCCCEEEECCHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]