Click here to switch to the map view.

The map label for this gene is ygzD [H]

Identifier: 21910593

GI number: 21910593

Start: 1097928

End: 1098143

Strand: Reverse

Name: ygzD [H]

Synonym: SpyM3_1057

Alternate gene names: 21910593

Gene position: 1098143-1097928 (Counterclockwise)

Preceding gene: 21910594

Following gene: 21910592

Centisome position: 57.78

GC content: 41.67

Gene sequence:

>216_bases
ATGGAGGTTATTCTTAAAAATCGGCTCAAAGAATTACGAGCCAGAGATGGAATTAATCAAACGGAAATGGCTAAACTGGC
AGGAGTATCGAGGCAGACCATCAGTCTCATTGAGCGTAACGAGTACACCCCATCAGTTATAATTGCTATGAAAATTGCAA
AGGTATTTCAGGAACCAGTTGAAGAGGTGTTTCATCTAGTGGAGGTCGAGGAATGA

Upstream 100 bases:

>100_bases
TTATCTGGTTTTGGGCTTTACAGGACTAGCCTTGCTGTTGAATACTTTTTCTTATTTTAGAAAGTAAGTTATAAGTTAAA
GGAGAATGAAGGAGATGGCA

Downstream 100 bases:

>100_bases
AAAAGAAGAAGAATAGTTTTTTACGCTTGTTAAAAATGTTATTGCTATCAAGTTTGGCGGGAGGGATTATAGGTGGCATG
GTTGGAGCCTTTTTAGGTTA

Product: putative transcriptional regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 71

Protein sequence:

>71_residues
MEVILKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYTPSVIIAMKIAKVFQEPVEEVFHLVEVEE

Sequences:

>Translated_71_residues
MEVILKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYTPSVIIAMKIAKVFQEPVEEVFHLVEVEE
>Mature_71_residues
MEVILKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYTPSVIIAMKIAKVFQEPVEEVFHLVEVEE

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 8183; Mature: 8183

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVILKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYTPSVIIAMKIAKVFQEPV
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
EEVFHLVEVEE
HHHHHHHHCCC
>Mature Secondary Structure
MEVILKNRLKELRARDGINQTEMAKLAGVSRQTISLIERNEYTPSVIIAMKIAKVFQEPV
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
EEVFHLVEVEE
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]