Click here to switch to the map view.

The map label for this gene is ydeM [H]

Identifier: 218930091

GI number: 218930091

Start: 3402002

End: 3403177

Strand: Reverse

Name: ydeM [H]

Synonym: YPO3046

Alternate gene names: 218930091

Gene position: 3403177-3402002 (Counterclockwise)

Preceding gene: 218930092

Following gene: 218930087

Centisome position: 73.13

GC content: 39.29

Gene sequence:

>1176_bases
ATGCATATCACGGCTAAACCAACCAGCTACCAGTGTAATTTAAAGTGTGATTACTGCTTTTATCTCAGTAAAGAAAACAT
TTTTCAGCACAAAGGTTGGATGACTGAAGAAACCCTTGAAACATTTATCGAGCGATATATCAGTGCATCGGGGCATGATG
TGTATTTCACTTGGCAAGGGGGTGAGCCTACCATGGCTGGGCTGGATTTCTTTGAGAAAGCGATACAGTATCAGAACCGC
TATAAAGGGACTAAAAAAATACACAACGCTTTACAAACTAACGGTATTTTATTAGATGATGCATGGTGTCTCTTTCTAAG
AGAAAATCATTTTTTAGTCGGTGTGTCTATTGATGGCCCTAAAGAGTTACACGATCGCTACCGTGTGACTCGCTCAGGCA
AAGGATCGTTTGATAAAGTGATGGCAGGTATTGAGCAACTCAAAAAACATCAGGTAGAGTTTAATACATTAACCGTGATA
AATCGTATCAATGTAAAATACCCCCTTGAAGTTTATCGAACGTTAAAATCTATCGGTGCTAAACATATCCAATTTATTGA
ACTGTTGGAAACAACCGAGCCTAATATTGATTTTTCAAATCAAAAAAGCACGTTTGAACTTATTGAGTTCACTGTCCCTG
CGGTTGATTATGGCCATTTCATGGCGGAGGTCTTCAAAGAATGGGTTCGCCATGATGTAGGAACTCTCTTTATTCGCCAG
TTTGAGTCTTTTGTCAGCCGATTTATTGGCAATGGGCACACGAGCTGTGTTTTCCAAAAATCGTGCAAAAATAATTTTGT
GATGGAGTCCAATGGTGACATTTATGAATGTGATCACTTTGTCTACCCTGAGTATAAAATAGGCAATATTTACCACGATA
AATTGGATTCGTTGGCGAGCGATAAATTATCCGCGCAAAAAGAGGTGCTATCTGAGTCATGCCGTAAGTGTATGTATAAA
GCCATTTGCTATGGCGGTTGCCCAAAACATAGGATTGATCAGGACAGCGATGGGATGAAATCCTATTTTTGCGCAGGGTA
TAAAATACTCTTCTCGGTTATGGTGCCTTATATGAATGCGCTGGCTGAATTAGAAAAAAATGGTATTCCATTGGATAAGA
TCATGGGTATCGTCGATGACATTGAATGTGGAATAAAATCACAACAGCAGCATTAA

Upstream 100 bases:

>100_bases
GGATAAATTTAATAAAATTAAGCAATCGCTTGGTATGAATTAAGCCGCCAAAGGCGGCAAGTATTTTTCTTGCCGTCTGT
CTATCTCCATGAGGAAAACT

Downstream 100 bases:

>100_bases
TTATGGTCATTGACCTACAAGATAGAGGCTCACTAATATAAAAGATGGCGTATTAGTGAGCGAACACGGGGTCCAAGCTA
ATTGGTATTGTTACAAACAG

Product: putative sulfatase modifier protein

Products: NA

Alternate protein names: AnSME homolog [H]

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MHITAKPTSYQCNLKCDYCFYLSKENIFQHKGWMTEETLETFIERYISASGHDVYFTWQGGEPTMAGLDFFEKAIQYQNR
YKGTKKIHNALQTNGILLDDAWCLFLRENHFLVGVSIDGPKELHDRYRVTRSGKGSFDKVMAGIEQLKKHQVEFNTLTVI
NRINVKYPLEVYRTLKSIGAKHIQFIELLETTEPNIDFSNQKSTFELIEFTVPAVDYGHFMAEVFKEWVRHDVGTLFIRQ
FESFVSRFIGNGHTSCVFQKSCKNNFVMESNGDIYECDHFVYPEYKIGNIYHDKLDSLASDKLSAQKEVLSESCRKCMYK
AICYGGCPKHRIDQDSDGMKSYFCAGYKILFSVMVPYMNALAELEKNGIPLDKIMGIVDDIECGIKSQQQH

Sequences:

>Translated_391_residues
MHITAKPTSYQCNLKCDYCFYLSKENIFQHKGWMTEETLETFIERYISASGHDVYFTWQGGEPTMAGLDFFEKAIQYQNR
YKGTKKIHNALQTNGILLDDAWCLFLRENHFLVGVSIDGPKELHDRYRVTRSGKGSFDKVMAGIEQLKKHQVEFNTLTVI
NRINVKYPLEVYRTLKSIGAKHIQFIELLETTEPNIDFSNQKSTFELIEFTVPAVDYGHFMAEVFKEWVRHDVGTLFIRQ
FESFVSRFIGNGHTSCVFQKSCKNNFVMESNGDIYECDHFVYPEYKIGNIYHDKLDSLASDKLSAQKEVLSESCRKCMYK
AICYGGCPKHRIDQDSDGMKSYFCAGYKILFSVMVPYMNALAELEKNGIPLDKIMGIVDDIECGIKSQQQH
>Mature_391_residues
MHITAKPTSYQCNLKCDYCFYLSKENIFQHKGWMTEETLETFIERYISASGHDVYFTWQGGEPTMAGLDFFEKAIQYQNR
YKGTKKIHNALQTNGILLDDAWCLFLRENHFLVGVSIDGPKELHDRYRVTRSGKGSFDKVMAGIEQLKKHQVEFNTLTVI
NRINVKYPLEVYRTLKSIGAKHIQFIELLETTEPNIDFSNQKSTFELIEFTVPAVDYGHFMAEVFKEWVRHDVGTLFIRQ
FESFVSRFIGNGHTSCVFQKSCKNNFVMESNGDIYECDHFVYPEYKIGNIYHDKLDSLASDKLSAQKEVLSESCRKCMYK
AICYGGCPKHRIDQDSDGMKSYFCAGYKILFSVMVPYMNALAELEKNGIPLDKIMGIVDDIECGIKSQQQH

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=383, Percent_Identity=65.7963446475196, Blast_Score=553, Evalue=1e-159,
Organism=Escherichia coli, GI48994973, Length=392, Percent_Identity=40.3061224489796, Blast_Score=329, Evalue=2e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 45179; Mature: 45179

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHITAKPTSYQCNLKCDYCFYLSKENIFQHKGWMTEETLETFIERYISASGHDVYFTWQG
CEECCCCCCEEEEEEEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
GEPTMAGLDFFEKAIQYQNRYKGTKKIHNALQTNGILLDDAWCLFLRENHFLVGVSIDGP
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCEEEEEECCEEEEEEECCCH
KELHDRYRVTRSGKGSFDKVMAGIEQLKKHQVEFNTLTVINRINVKYPLEVYRTLKSIGA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHEEEEEEECCCCCCHHHHHHHHHHCH
KHIQFIELLETTEPNIDFSNQKSTFELIEFTVPAVDYGHFMAEVFKEWVRHDVGTLFIRQ
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FESFVSRFIGNGHTSCVFQKSCKNNFVMESNGDIYECDHFVYPEYKIGNIYHDKLDSLAS
HHHHHHHHHCCCCCHHEEHHHHCCCEEEECCCCEEECCCEECCCEEECCCHHHHHHHHHH
DKLSAQKEVLSESCRKCMYKAICYGGCPKHRIDQDSDGMKSYFCAGYKILFSVMVPYMNA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAELEKNGIPLDKIMGIVDDIECGIKSQQQH
HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MHITAKPTSYQCNLKCDYCFYLSKENIFQHKGWMTEETLETFIERYISASGHDVYFTWQG
CEECCCCCCEEEEEEEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
GEPTMAGLDFFEKAIQYQNRYKGTKKIHNALQTNGILLDDAWCLFLRENHFLVGVSIDGP
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCEEEEEECCEEEEEEECCCH
KELHDRYRVTRSGKGSFDKVMAGIEQLKKHQVEFNTLTVINRINVKYPLEVYRTLKSIGA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHEEEEEEECCCCCCHHHHHHHHHHCH
KHIQFIELLETTEPNIDFSNQKSTFELIEFTVPAVDYGHFMAEVFKEWVRHDVGTLFIRQ
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FESFVSRFIGNGHTSCVFQKSCKNNFVMESNGDIYECDHFVYPEYKIGNIYHDKLDSLAS
HHHHHHHHHCCCCCHHEEHHHHCCCEEEECCCCEEECCCEECCCEEECCCHHHHHHHHHH
DKLSAQKEVLSESCRKCMYKAICYGGCPKHRIDQDSDGMKSYFCAGYKILFSVMVPYMNA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAELEKNGIPLDKIMGIVDDIECGIKSQQQH
HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]