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The map label for this gene is fimB [H]

Identifier: 218929037

GI number: 218929037

Start: 2176407

End: 2177051

Strand: Reverse

Name: fimB [H]

Synonym: YPO1921

Alternate gene names: 218929037

Gene position: 2177051-2176407 (Counterclockwise)

Preceding gene: 218929038

Following gene: 218929036

Centisome position: 46.78

GC content: 42.48

Gene sequence:

>645_bases
ATGATCTTGATTGCCCGCCAAATTATCGCCTGCTCGATGTTGCTGCTCACCAGCGTATCCTTATCGGTACAAGCCAGTGT
TGTCATGACAGGGACGCGTATCATTTATCCTGAAGGCTCGCGGGAAAAAGTATTACAGCTGAGTAATAAAGATGACCATC
CTAATTTAGTCCAACTGTGGATGGATGATGGAAATAATCAATCTTCACCCTCGAAAAGTGATGTTCCTTTCGCACTGACA
CCACAAATATTCCGGATGGAAGCCAACAGTGGGCAAGTTGTCCGTTTGACTTACATTGCGCGTAATTTACCCAAAAATCG
TGAATCGGTTTTTTATCTTAACTTTTTACAAATCCCCGCATTAAAAGCCGATACGCTAGGTGAAAAAATAAGCGTCACCC
TAGATACAACGACAGGTAACAAAATTAAAGTACATAACCCAACAGGTTATTACATCAGCCTGCGCGATGCTAAAATTGTC
AGTAACGGCAAAACCGTTTCGTTTGCCACTAGTGAAATGTTCGCGCCCGACTCTACCACTGATTTGGCCCTGCCCATTGG
GATTAAAGCCAAGAAAGGGGAATTACTGATACTGAACGTAGTTAATGATTACGGTGCCACCATTCCTAATAATTATTATC
TGTAA

Upstream 100 bases:

>100_bases
ACCCCTAACCGTTCATGGCAACTGAGCATTTTCATGAATATGTCGGCCAACCGGTAACGGGGCCTTAATGGACCAGAGAA
AACAAGGATAAGTAAGTAAC

Downstream 100 bases:

>100_bases
TCTGCTCCTGATGTTAATCCAATCTATCACCAGACACTGGGAACACTGGTGAGAATCGCTCCTTGGCTCTCATGCTTGCT
GACACAAAGCTTGCTGGTCA

Product: putative pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MILIARQIIACSMLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLWMDDGNNQSSPSKSDVPFALT
PQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPALKADTLGEKISVTLDTTTGNKIKVHNPTGYYISLRDAKIV
SNGKTVSFATSEMFAPDSTTDLALPIGIKAKKGELLILNVVNDYGATIPNNYYL

Sequences:

>Translated_214_residues
MILIARQIIACSMLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLWMDDGNNQSSPSKSDVPFALT
PQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPALKADTLGEKISVTLDTTTGNKIKVHNPTGYYISLRDAKIV
SNGKTVSFATSEMFAPDSTTDLALPIGIKAKKGELLILNVVNDYGATIPNNYYL
>Mature_214_residues
MILIARQIIACSMLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLWMDDGNNQSSPSKSDVPFALT
PQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPALKADTLGEKISVTLDTTTGNKIKVHNPTGYYISLRDAKIV
SNGKTVSFATSEMFAPDSTTDLALPIGIKAKKGELLILNVVNDYGATIPNNYYL

Specific function: Required for the biogenesis of the filamentous hemagglutinin and the fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788428, Length=137, Percent_Identity=40.8759124087591, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786333, Length=250, Percent_Identity=29.6, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1789532, Length=234, Percent_Identity=27.3504273504274, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787171, Length=224, Percent_Identity=27.2321428571429, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1790771, Length=225, Percent_Identity=24.4444444444444, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786936, Length=229, Percent_Identity=27.9475982532751, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1788677, Length=209, Percent_Identity=30.1435406698565, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 23569; Mature: 23569

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILIARQIIACSMLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLW
CEEEEHHHHHHHHHHHHHCCEEEEEEEEEECEEEEECCCCHHHEEEECCCCCCCCEEEEE
MDDGNNQSSPSKSDVPFALTPQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPA
EECCCCCCCCCCCCCCEEECCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEECCC
LKADTLGEKISVTLDTTTGNKIKVHNPTGYYISLRDAKIVSNGKTVSFATSEMFAPDSTT
CCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECEEEECCCCEEEEEECCEECCCCCC
DLALPIGIKAKKGELLILNVVNDYGATIPNNYYL
CEEEEECEEECCCCEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MILIARQIIACSMLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLW
CEEEEHHHHHHHHHHHHHCCEEEEEEEEEECEEEEECCCCHHHEEEECCCCCCCCEEEEE
MDDGNNQSSPSKSDVPFALTPQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPA
EECCCCCCCCCCCCCCEEECCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEECCC
LKADTLGEKISVTLDTTTGNKIKVHNPTGYYISLRDAKIVSNGKTVSFATSEMFAPDSTT
CCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECEEEECCCCEEEEEECCEECCCCCC
DLALPIGIKAKKGELLILNVVNDYGATIPNNYYL
CEEEEECEEECCCCEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360139; 1354611; 12910271 [H]