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The map label for this gene is fimB [H]

Identifier: 218928839

GI number: 218928839

Start: 1953688

End: 1954491

Strand: Direct

Name: fimB [H]

Synonym: YPO1711

Alternate gene names: 218928839

Gene position: 1953688-1954491 (Clockwise)

Preceding gene: 218928838

Following gene: 218928841

Centisome position: 41.98

GC content: 48.26

Gene sequence:

>804_bases
ATGAAAACGTTATGGCTAATCCTCAGGCCGCGTGCCCGTAAGGTGAATAATCTGCGTACTTTACTGATTACGGCTATTTT
AAGCAGTTTGGTGTTGAGTGCTACGGTTCAAGCCGGTGTGGCGATTGGTCTGACACGGGTGATAGTGACCGGTGCTGATA
AATCCGGCAGTGTGCAGATCCTCAATGACGGCCTTCATCCAGCGTTGCTGCAACTCTGGGTGGATAATAATATCGCTGAA
ATGGATAAGCCCATTGAGCAGATAAACGTCCCGTTTGTGGTTGATAGCCCGGTATTCCGCCTTAACGCCAAGACCAATAA
ATCTATCCGTATTTATTATACCGGAGGCGCTAATCAGTTGCCGTCTGACCGTGAATCTATGTTTTGGCTTAATGTGTTGG
AAGTGCCGCCCAAAGCGTCTGCAAATCAATCATCACAAAATGCGGTACAAATCGCTTTTCGCTCACGTATTAAATTATTT
TACCGCCCGGCAGGAATACCGATCAGTTCAGAAGGTGTAGCAACTAAGTTGTCTTTCACTCTGGTACCTAAAGGGGAGGG
CCGTGTATTACGCGTGGCTAATCCGACGCCATTCAATGTCACATTCCAGACATTGGCTATCGCCCAAAGTCATACCGCGC
AGGGCGTCACTATCAAACTGGGCGCTGATGATATGGTGGGGCCAAAAAGCAGCGTGGACAGTGCCCCAGTGGGCAACAAC
GCGCTGGCGAAGAATATGAGTGTGTTTTTCACCATTATTGATGATTTTGGCTCACCCATTGAAGGGCAGCAGCCACTACA
ATAA

Upstream 100 bases:

>100_bases
AAAGTTACACGGTCCCCATGCAGGCGGGAATTTACCAAATAGAAAACACCGTGACACCTGGTTCAGTAAAAGGTGAGTTC
ACATTTACGTTGATCTATAA

Downstream 100 bases:

>100_bases
ATCAGTGATCGTCTTGCCGGGGGGAAGCCAATATTCAGGCTTCCCCCAAGAGCCTAATGACTTTTTTGTGTTACACGTAA
GAGACTCACCAGTGCCGCGA

Product: putative chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKTLWLILRPRARKVNNLRTLLITAILSSLVLSATVQAGVAIGLTRVIVTGADKSGSVQILNDGLHPALLQLWVDNNIAE
MDKPIEQINVPFVVDSPVFRLNAKTNKSIRIYYTGGANQLPSDRESMFWLNVLEVPPKASANQSSQNAVQIAFRSRIKLF
YRPAGIPISSEGVATKLSFTLVPKGEGRVLRVANPTPFNVTFQTLAIAQSHTAQGVTIKLGADDMVGPKSSVDSAPVGNN
ALAKNMSVFFTIIDDFGSPIEGQQPLQ

Sequences:

>Translated_267_residues
MKTLWLILRPRARKVNNLRTLLITAILSSLVLSATVQAGVAIGLTRVIVTGADKSGSVQILNDGLHPALLQLWVDNNIAE
MDKPIEQINVPFVVDSPVFRLNAKTNKSIRIYYTGGANQLPSDRESMFWLNVLEVPPKASANQSSQNAVQIAFRSRIKLF
YRPAGIPISSEGVATKLSFTLVPKGEGRVLRVANPTPFNVTFQTLAIAQSHTAQGVTIKLGADDMVGPKSSVDSAPVGNN
ALAKNMSVFFTIIDDFGSPIEGQQPLQ
>Mature_267_residues
MKTLWLILRPRARKVNNLRTLLITAILSSLVLSATVQAGVAIGLTRVIVTGADKSGSVQILNDGLHPALLQLWVDNNIAE
MDKPIEQINVPFVVDSPVFRLNAKTNKSIRIYYTGGANQLPSDRESMFWLNVLEVPPKASANQSSQNAVQIAFRSRIKLF
YRPAGIPISSEGVATKLSFTLVPKGEGRVLRVANPTPFNVTFQTLAIAQSHTAQGVTIKLGADDMVGPKSSVDSAPVGNN
ALAKNMSVFFTIIDDFGSPIEGQQPLQ

Specific function: Required for the biogenesis of the filamentous hemagglutinin and the fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=252, Percent_Identity=36.1111111111111, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1788428, Length=249, Percent_Identity=34.5381526104418, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789532, Length=190, Percent_Identity=32.6315789473684, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1790771, Length=196, Percent_Identity=33.6734693877551, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1788677, Length=222, Percent_Identity=31.981981981982, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786936, Length=232, Percent_Identity=29.3103448275862, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786743, Length=241, Percent_Identity=30.7053941908714, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI87082203, Length=187, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787171, Length=242, Percent_Identity=29.7520661157025, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87081806, Length=186, Percent_Identity=30.1075268817204, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 28873; Mature: 28873

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLWLILRPRARKVNNLRTLLITAILSSLVLSATVQAGVAIGLTRVIVTGADKSGSVQI
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCEEE
LNDGLHPALLQLWVDNNIAEMDKPIEQINVPFVVDSPVFRLNAKTNKSIRIYYTGGANQL
EECCCCHHHEEEEECCCHHHHCCCHHHCCCCEEECCCEEEEECCCCCEEEEEECCCCCCC
PSDRESMFWLNVLEVPPKASANQSSQNAVQIAFRSRIKLFYRPAGIPISSEGVATKLSFT
CCCCCCEEEEEEEECCCCCCCCCCCCHHEEEEEHHCEEEEECCCCCEECCCCCEEEEEEE
LVPKGEGRVLRVANPTPFNVTFQTLAIAQSHTAQGVTIKLGADDMVGPKSSVDSAPVGNN
EEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
ALAKNMSVFFTIIDDFGSPIEGQQPLQ
HHHCCCEEEEEEEHHCCCCCCCCCCCC
>Mature Secondary Structure
MKTLWLILRPRARKVNNLRTLLITAILSSLVLSATVQAGVAIGLTRVIVTGADKSGSVQI
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCEEE
LNDGLHPALLQLWVDNNIAEMDKPIEQINVPFVVDSPVFRLNAKTNKSIRIYYTGGANQL
EECCCCHHHEEEEECCCHHHHCCCHHHCCCCEEECCCEEEEECCCCCEEEEEECCCCCCC
PSDRESMFWLNVLEVPPKASANQSSQNAVQIAFRSRIKLFYRPAGIPISSEGVATKLSFT
CCCCCCEEEEEEEECCCCCCCCCCCCHHEEEEEHHCEEEEECCCCCEECCCCCEEEEEEE
LVPKGEGRVLRVANPTPFNVTFQTLAIAQSHTAQGVTIKLGADDMVGPKSSVDSAPVGNN
EEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
ALAKNMSVFFTIIDDFGSPIEGQQPLQ
HHHCCCEEEEEEEHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360139; 1354611; 12910271 [H]