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The map label for this gene is ydcJ [H]

Identifier: 218928545

GI number: 218928545

Start: 1579841

End: 1581277

Strand: Reverse

Name: ydcJ [H]

Synonym: YPO1397

Alternate gene names: 218928545

Gene position: 1581277-1579841 (Counterclockwise)

Preceding gene: 218928558

Following gene: 218928533

Centisome position: 33.98

GC content: 48.92

Gene sequence:

>1437_bases
ATGCCCCCCCAACAGTTTGTGCATCCCGATGAGATACGGGCCAAATTCTCCAGCGCTATGTCGGATATGTATCAGACCGA
AGTCCCTCTATATAGCACATTATTACGGCTCGTTGCGGACACGAATACACAAGAGATGGTGCAAGATCAGAAACTTACCC
GTCATTTGCAGCAAACTGGGGAAATTGAACGCCTAACGATGGAAAGACATGGCGCCATCCGCGTCGGGACAGCCGAAGAA
CTCAAGATGCTGCGGCGCTTGTTTGCAGTCATGGGAATGGTGCCGGTCGGTTATTATGATTTAGCACCAGCGGGTGTCCC
GGTTCACTCCACCGCCTTCCGTGCGGTGCATGAAACCTCACTGCAAGCCTGCCCTTTCAGAGTCTTCACCTCATTACTGC
GTCTGGAGTTGATTGAGCAACCTACACTACGGCAACTGGCTGCGGATATTCTGGCGAAAAGAACAATTTTCACCCCACAG
GCGATTAAACTAATTGTTCAGCATGAAACATCGGGGGGGCTCAATCGCCATCAAGCCGATGATTTCATTGCTCAGTCGCT
GGAAACATTTCGCTGGCATCATCAGGCAACGGTCAGCACTGAAACCTACCAACAGCTACACGATCAACACCGTCTGATTG
CTGATGTGGTCGCTTTCAAAGGTCCGCATATTAACCACCTAACTCCACGGACCTTAAATATCGACGTCGTACAAACAGCA
ATGGCAGAGCATAATATGATGCCCAAAGCCGTTATCGAAGGGCCACCCCCCCGCCACTGCCCAATACTGTTACGCCAAAC
CAGCTTCAAGGCGCTGGAGGAAAAAATCGCGTTTGTATCAAATGGTGGGCAAATAATACCAGGCCACCATACGGCCCGCT
TCGGGGAGATAGAGCAACGAGGAGCCGCTTTGACGGCCAAAGGCCGTAATCTGTATGACCACTTACTGCAAAGCGCACAG
GATCAATTGAACGTTCCTGTAAATGAGAACAATGCGGCGCAATATAGCGCGATCCTGAGCGAGAAATTTAGTCAATTCCC
TGATGATTACCCAACAATGCGAGCAGAGAAACTCGCCTTCTTCCGCTATTTTCCTACAGAAAAAGGCCTTATCACTGCAT
CAATACAGGAAATACAGGAAATACAGGAAATACAGGAAATACAGGAAATGACATTAGACGAACTTATTGATAACGGCTTT
ATTCAATATGAACCGTTGGTTTATGAAGATTTCCTGCCAGTCAGCGCCGCTGGAATATTCCAGTCAAACTTAGGCGAGAA
AGGGCAGAGTCACTTTACCGGGCACTCCAATAAAGCAGACTTCCAGCGGGATTTGGGGATTGCGGTTATTGATGAACTGC
AACTCTACGAAGCAACCCAGCAACGTTCCGTTGCTGAATGTGCAGCCGCCCTCAAACTAACGTTGTTAAGCCAATAA

Upstream 100 bases:

>100_bases
AAACTGTATCAGCGTGATCCGCAACCATGATGGCCTACATTGAAAATTGTCTACATGAAAACCTGTCTACACTGAAAGCG
CCTGAAGGAGTTATCCGATT

Downstream 100 bases:

>100_bases
AAGGGAGCTACTTAGTATCAGGAGATAGCGCCTGAATATTTAACAATAGTTTATCTGCCCTATCGGACGGTAGTTGCGCA
TCGACAGGTAAGTACCACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MPPQQFVHPDEIRAKFSSAMSDMYQTEVPLYSTLLRLVADTNTQEMVQDQKLTRHLQQTGEIERLTMERHGAIRVGTAEE
LKMLRRLFAVMGMVPVGYYDLAPAGVPVHSTAFRAVHETSLQACPFRVFTSLLRLELIEQPTLRQLAADILAKRTIFTPQ
AIKLIVQHETSGGLNRHQADDFIAQSLETFRWHHQATVSTETYQQLHDQHRLIADVVAFKGPHINHLTPRTLNIDVVQTA
MAEHNMMPKAVIEGPPPRHCPILLRQTSFKALEEKIAFVSNGGQIIPGHHTARFGEIEQRGAALTAKGRNLYDHLLQSAQ
DQLNVPVNENNAAQYSAILSEKFSQFPDDYPTMRAEKLAFFRYFPTEKGLITASIQEIQEIQEIQEIQEMTLDELIDNGF
IQYEPLVYEDFLPVSAAGIFQSNLGEKGQSHFTGHSNKADFQRDLGIAVIDELQLYEATQQRSVAECAAALKLTLLSQ

Sequences:

>Translated_478_residues
MPPQQFVHPDEIRAKFSSAMSDMYQTEVPLYSTLLRLVADTNTQEMVQDQKLTRHLQQTGEIERLTMERHGAIRVGTAEE
LKMLRRLFAVMGMVPVGYYDLAPAGVPVHSTAFRAVHETSLQACPFRVFTSLLRLELIEQPTLRQLAADILAKRTIFTPQ
AIKLIVQHETSGGLNRHQADDFIAQSLETFRWHHQATVSTETYQQLHDQHRLIADVVAFKGPHINHLTPRTLNIDVVQTA
MAEHNMMPKAVIEGPPPRHCPILLRQTSFKALEEKIAFVSNGGQIIPGHHTARFGEIEQRGAALTAKGRNLYDHLLQSAQ
DQLNVPVNENNAAQYSAILSEKFSQFPDDYPTMRAEKLAFFRYFPTEKGLITASIQEIQEIQEIQEIQEMTLDELIDNGF
IQYEPLVYEDFLPVSAAGIFQSNLGEKGQSHFTGHSNKADFQRDLGIAVIDELQLYEATQQRSVAECAAALKLTLLSQ
>Mature_477_residues
PPQQFVHPDEIRAKFSSAMSDMYQTEVPLYSTLLRLVADTNTQEMVQDQKLTRHLQQTGEIERLTMERHGAIRVGTAEEL
KMLRRLFAVMGMVPVGYYDLAPAGVPVHSTAFRAVHETSLQACPFRVFTSLLRLELIEQPTLRQLAADILAKRTIFTPQA
IKLIVQHETSGGLNRHQADDFIAQSLETFRWHHQATVSTETYQQLHDQHRLIADVVAFKGPHINHLTPRTLNIDVVQTAM
AEHNMMPKAVIEGPPPRHCPILLRQTSFKALEEKIAFVSNGGQIIPGHHTARFGEIEQRGAALTAKGRNLYDHLLQSAQD
QLNVPVNENNAAQYSAILSEKFSQFPDDYPTMRAEKLAFFRYFPTEKGLITASIQEIQEIQEIQEIQEMTLDELIDNGFI
QYEPLVYEDFLPVSAAGIFQSNLGEKGQSHFTGHSNKADFQRDLGIAVIDELQLYEATQQRSVAECAAALKLTLLSQ

Specific function: Unknown

COG id: COG5383

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv3292 [H]

Homologues:

Organism=Escherichia coli, GI1787692, Length=462, Percent_Identity=54.1125541125541, Blast_Score=464, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009770 [H]

Pfam domain/function: PF07063 DUF1338 [H]

EC number: NA

Molecular weight: Translated: 53930; Mature: 53799

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPQQFVHPDEIRAKFSSAMSDMYQTEVPLYSTLLRLVADTNTQEMVQDQKLTRHLQQTG
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
EIERLTMERHGAIRVGTAEELKMLRRLFAVMGMVPVGYYDLAPAGVPVHSTAFRAVHETS
CHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHH
LQACPFRVFTSLLRLELIEQPTLRQLAADILAKRTIFTPQAIKLIVQHETSGGLNRHQAD
HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCHHHHH
DFIAQSLETFRWHHQATVSTETYQQLHDQHRLIADVVAFKGPHINHLTPRTLNIDVVQTA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHH
MAEHNMMPKAVIEGPPPRHCPILLRQTSFKALEEKIAFVSNGGQIIPGHHTARFGEIEQR
HHHHCCCCHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEECCCCCCHHHCCHHHC
GAALTAKGRNLYDHLLQSAQDQLNVPVNENNAAQYSAILSEKFSQFPDDYPTMRAEKLAF
CCEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
FRYFPTEKGLITASIQEIQEIQEIQEIQEMTLDELIDNGFIQYEPLVYEDFLPVSAAGIF
HHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHCCCCHHHHHHH
QSNLGEKGQSHFTGHSNKADFQRDLGIAVIDELQLYEATQQRSVAECAAALKLTLLSQ
HHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PPQQFVHPDEIRAKFSSAMSDMYQTEVPLYSTLLRLVADTNTQEMVQDQKLTRHLQQTG
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
EIERLTMERHGAIRVGTAEELKMLRRLFAVMGMVPVGYYDLAPAGVPVHSTAFRAVHETS
CHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHH
LQACPFRVFTSLLRLELIEQPTLRQLAADILAKRTIFTPQAIKLIVQHETSGGLNRHQAD
HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCHHHHH
DFIAQSLETFRWHHQATVSTETYQQLHDQHRLIADVVAFKGPHINHLTPRTLNIDVVQTA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHH
MAEHNMMPKAVIEGPPPRHCPILLRQTSFKALEEKIAFVSNGGQIIPGHHTARFGEIEQR
HHHHCCCCHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEECCCCCCHHHCCHHHC
GAALTAKGRNLYDHLLQSAQDQLNVPVNENNAAQYSAILSEKFSQFPDDYPTMRAEKLAF
CCEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
FRYFPTEKGLITASIQEIQEIQEIQEIQEMTLDELIDNGFIQYEPLVYEDFLPVSAAGIF
HHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHCCCCHHHHHHH
QSNLGEKGQSHFTGHSNKADFQRDLGIAVIDELQLYEATQQRSVAECAAALKLTLLSQ
HHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]