Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 218905656

GI number: 218905656

Start: 4297281

End: 4297841

Strand: Reverse

Name: radC [C]

Synonym: BCAH820_4541

Alternate gene names: 218905656

Gene position: 4297841-4297281 (Counterclockwise)

Preceding gene: 218905657

Following gene: 218905655

Centisome position: 81.05

GC content: 39.57

Gene sequence:

>561_bases
ATGAACGGTATTCGTGATGTTGTCAAAGAAGAACAGCCACGGGAGCGTTTATTGTTAGAGGGAGCTGGAAGTTTATCAAA
TCGGGAGCTTCTTGCAGTGTTACTGAGAACGGGGTCTAAGGAAGAATCAGTTTTGAAGTTATCAGATAAAATTTTACATC
ACTTTGATGGTTTACGTATGTTGAAAGATGCAACGTTAGAAGAGCTTGTCAGTATACATGGTGTTGGGATTGCAAAGGCA
ACGCAGCTTATAGCTGCTTTTGAACTCGGTAGAAGAATGGTGCGTTTAGAGTATCGAAATAGATATAGCATTCGAAGTCC
AGAAGATTGCGCGAGATATATGATGGAAGAAATGCGCTTCTTGCAGCAGGAGCATTTTGTATGTCTCTATTTGAACACAA
AGAATCAAGTTATACATAGGCAAACGATTTTTATTGGAAGTTTAAACTCTTCAATTGTACATCCAAGGGAAGTTTTTAAA
GAAGCATTTCGCCGTGCAGCAGCCTCTATCATATGTCTTCATAACCATCCCTCAGGAGACCCCATAAACATAGTATCCTA
A

Upstream 100 bases:

>100_bases
TCACGTCTTGTTCGGGAATTAAAACAATTTAATATTGATGTAACCCATGCGTAAAATTGCATGGGATTTTCTTTGAGAGA
ACAAATAAAGGGGTGGAGAA

Downstream 100 bases:

>100_bases
ACTAGAGTACTCTAAGTACTCAAAGTTTAGGATTTTTTAAATTCAATACTTTAACTGATGAATATATATAGGTATTATTT
AAAGTAGTTAAAGTATTTAA

Product: DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELVSIHGVGIAKA
TQLIAAFELGRRMVRLEYRNRYSIRSPEDCARYMMEEMRFLQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFK
EAFRRAAASIICLHNHPSGDPINIVS

Sequences:

>Translated_186_residues
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELVSIHGVGIAKA
TQLIAAFELGRRMVRLEYRNRYSIRSPEDCARYMMEEMRFLQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFK
EAFRRAAASIICLHNHPSGDPINIVS
>Mature_186_residues
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELVSIHGVGIAKA
TQLIAAFELGRRMVRLEYRNRYSIRSPEDCARYMMEEMRFLQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFK
EAFRRAAASIICLHNHPSGDPINIVS

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=167, Percent_Identity=36.5269461077844, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1788997, Length=78, Percent_Identity=44.8717948717949, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788312, Length=68, Percent_Identity=45.5882352941176, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI2367100, Length=68, Percent_Identity=45.5882352941176, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 21309; Mature: 21309

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRM
CCCHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LKDATLEELVSIHGVGIAKATQLIAAFELGRRMVRLEYRNRYSIRSPEDCARYMMEEMRF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFKEAFRRAAASIICLHNHPSGD
HHHCCEEEEEECCCCCEEEHHEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCC
PINIVS
CCCCCC
>Mature Secondary Structure
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRM
CCCHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LKDATLEELVSIHGVGIAKATQLIAAFELGRRMVRLEYRNRYSIRSPEDCARYMMEEMRF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFKEAFRRAAASIICLHNHPSGD
HHHCCEEEEEECCCCCEEEHHEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCC
PINIVS
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA