Click here to switch to the map view.

The map label for this gene is ymdB [H]

Identifier: 218904905

GI number: 218904905

Start: 3622185

End: 3622979

Strand: Reverse

Name: ymdB [H]

Synonym: BCAH820_3789

Alternate gene names: 218904905

Gene position: 3622979-3622185 (Counterclockwise)

Preceding gene: 218904906

Following gene: 218904904

Centisome position: 68.32

GC content: 38.11

Gene sequence:

>795_bases
ATGAGAATATTATTTGTTGGAGATGTAGTAGGATCTCCTGGTAGAGGTATGATTCAACAATACGTACCGGCACTAAAGAA
AAAATATACACCTACAGTAACCATTATTAATGGAGAAAATGCAGCAGGTGGACGTGGAATTACGGAAAAAATATACCGAA
ACTTTTTAGAATGCGGAGCACAAGCGGTTACACTAGGAAATCACGCTTGGGATAACCGTGAAGTATTTGAATTTATTGAT
GATGCAAAATATCTTGCAAGACCAGCTAACTTCCCAGAAGGAACTCCAGGAAAAGGGCTTATTTTTGTGAACTGTAATGG
AACAGAAGTTGCAGTTATTAACTTACAAGGACGTACATTCCTTCCTCCAATTGATTGTCCATTCCGTAAAGTGGATGAAT
TAATTAACATTGCGAAAAAACGTACGAATATTATCTTTGTTGATTTCCATGCGGAAACGACAAGTGAAAAACAAGCGTTA
GGTTGGTATGTAGATGGTCGTGCTACAGCGGTAGTAGGTACACATACGCATGTTCCTACAGCAGATAATCGCATTTTACC
GAGCGGAACGGCATATATCACAGATGTTGGTATGACAGGACCGTACGATGGAATTTTAGGTATGGACCGAGAAGCAGTAT
TGAAGAAGTTTTTAACAAACTTACCAGTGCGATTTGAAGTGACAAATGGTAGAACACAATTAAGTGCAGTGCTAATTGAT
GTGGATCCTAATACAGGAAAAGCTAAGAAAATTGAGCGTATCTTAATTAATGATGATCAGCCATTTTTTGAGTAA

Upstream 100 bases:

>100_bases
CTAGCATACAAGTGAAACAAACTTATAATAAATATATTGTAAGGAAATCACTTGAAGCTATAGTAATAAAAAAATGTAGT
ACATAGGAAGGGTAAGACAT

Downstream 100 bases:

>100_bases
TCCCTATTAAAATTTAGATAAGTTATTATTTTTTAATTTTTTAGAAAAATTACAGAAATTTAGCAGGAATACGTGTCATT
CCTCGTGAATATAAGTTAAA

Product: phosphoesterase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MRILFVGDVVGSPGRGMIQQYVPALKKKYTPTVTIINGENAAGGRGITEKIYRNFLECGAQAVTLGNHAWDNREVFEFID
DAKYLARPANFPEGTPGKGLIFVNCNGTEVAVINLQGRTFLPPIDCPFRKVDELINIAKKRTNIIFVDFHAETTSEKQAL
GWYVDGRATAVVGTHTHVPTADNRILPSGTAYITDVGMTGPYDGILGMDREAVLKKFLTNLPVRFEVTNGRTQLSAVLID
VDPNTGKAKKIERILINDDQPFFE

Sequences:

>Translated_264_residues
MRILFVGDVVGSPGRGMIQQYVPALKKKYTPTVTIINGENAAGGRGITEKIYRNFLECGAQAVTLGNHAWDNREVFEFID
DAKYLARPANFPEGTPGKGLIFVNCNGTEVAVINLQGRTFLPPIDCPFRKVDELINIAKKRTNIIFVDFHAETTSEKQAL
GWYVDGRATAVVGTHTHVPTADNRILPSGTAYITDVGMTGPYDGILGMDREAVLKKFLTNLPVRFEVTNGRTQLSAVLID
VDPNTGKAKKIERILINDDQPFFE
>Mature_264_residues
MRILFVGDVVGSPGRGMIQQYVPALKKKYTPTVTIINGENAAGGRGITEKIYRNFLECGAQAVTLGNHAWDNREVFEFID
DAKYLARPANFPEGTPGKGLIFVNCNGTEVAVINLQGRTFLPPIDCPFRKVDELINIAKKRTNIIFVDFHAETTSEKQAL
GWYVDGRATAVVGTHTHVPTADNRILPSGTAYITDVGMTGPYDGILGMDREAVLKKFLTNLPVRFEVTNGRTQLSAVLID
VDPNTGKAKKIERILINDDQPFFE

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29085; Mature: 29085

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILFVGDVVGSPGRGMIQQYVPALKKKYTPTVTIINGENAAGGRGITEKIYRNFLECGA
CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
QAVTLGNHAWDNREVFEFIDDAKYLARPANFPEGTPGKGLIFVNCNGTEVAVINLQGRTF
EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEE
LPPIDCPFRKVDELINIAKKRTNIIFVDFHAETTSEKQALGWYVDGRATAVVGTHTHVPT
CCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHEEEEECCEEEEEEECCCCCCC
ADNRILPSGTAYITDVGMTGPYDGILGMDREAVLKKFLTNLPVRFEVTNGRTQLSAVLID
CCCEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEEE
VDPNTGKAKKIERILINDDQPFFE
ECCCCCCHHHEEEEEECCCCCCCC
>Mature Secondary Structure
MRILFVGDVVGSPGRGMIQQYVPALKKKYTPTVTIINGENAAGGRGITEKIYRNFLECGA
CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
QAVTLGNHAWDNREVFEFIDDAKYLARPANFPEGTPGKGLIFVNCNGTEVAVINLQGRTF
EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEE
LPPIDCPFRKVDELINIAKKRTNIIFVDFHAETTSEKQALGWYVDGRATAVVGTHTHVPT
CCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHEEEEECCEEEEEEECCCCCCC
ADNRILPSGTAYITDVGMTGPYDGILGMDREAVLKKFLTNLPVRFEVTNGRTQLSAVLID
CCCEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEEE
VDPNTGKAKKIERILINDDQPFFE
ECCCCCCHHHEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]