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The map label for this gene is ycfQ [H]

Identifier: 218904461

GI number: 218904461

Start: 3192186

End: 3192761

Strand: Reverse

Name: ycfQ [H]

Synonym: BCAH820_3345

Alternate gene names: 218904461

Gene position: 3192761-3192186 (Counterclockwise)

Preceding gene: 218904462

Following gene: 218904460

Centisome position: 60.21

GC content: 30.56

Gene sequence:

>576_bases
ATGGGGAGAAAGATTAGTTTTAACAAAGAACAAGCTTTAAATAAAGCGATGCATTTATTCTGGGAGAAAGGTTATGATGC
TACATATATATCAGATCTTATTGAAACGATGGGCATAAGTCGCTCTACTCTCTACGATAGTTTTGGAGATAAGGATGCAC
TATTTAAACTAGTTTTGGAACATTATAAAAACTATGGATCTCAAAAGAGAAATTTGCTTTTTAGTGGTATAAACGCGAAA
GCATCACTTACATCCTTTTTTTATCAACATATTGAAAAATGTTATTCAGATGAAATTCCAAAAGGTTGTATTATAACAAA
CTCCTCACTGCTTATTGGAAAAATTGATCCTGCCATAGAAGAAATACTCATAAATGATTTTAATGAACTTGAAAAAGTAT
TTAAGCAAGTTATCGAAGAAGGAAAAAGGAAAGGGGAAATTTCACAAGAGGCTGATACTGAATTAGTTGCATATTCTTTA
TTAAGTTTAAACCATAGCTTGAATATAATGTCCAAATATAAAAAGGAAAAAAAATTAGCCTATCGTCTAGTAGATAAGAC
TATTGCAGACCTATAG

Upstream 100 bases:

>100_bases
TTAAAGCGCCCTTTAACTGAAGGCTAGGTTTAGAAAAGTTTTTGTGGACTTATCGTTCCGAAAAGAATATATTAAAGTAT
ATGATAGGGGGTGTTATTAA

Downstream 100 bases:

>100_bases
TCTTTCTTTTTTTAATAATTTCGGAATGAACGTTCCAAAAAAGAAAGGAATGGTAAAGTTGAATAACAAGACAAATTTTC
TAATATTTATTTTGGCGATT

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MGRKISFNKEQALNKAMHLFWEKGYDATYISDLIETMGISRSTLYDSFGDKDALFKLVLEHYKNYGSQKRNLLFSGINAK
ASLTSFFYQHIEKCYSDEIPKGCIITNSSLLIGKIDPAIEEILINDFNELEKVFKQVIEEGKRKGEISQEADTELVAYSL
LSLNHSLNIMSKYKKEKKLAYRLVDKTIADL

Sequences:

>Translated_191_residues
MGRKISFNKEQALNKAMHLFWEKGYDATYISDLIETMGISRSTLYDSFGDKDALFKLVLEHYKNYGSQKRNLLFSGINAK
ASLTSFFYQHIEKCYSDEIPKGCIITNSSLLIGKIDPAIEEILINDFNELEKVFKQVIEEGKRKGEISQEADTELVAYSL
LSLNHSLNIMSKYKKEKKLAYRLVDKTIADL
>Mature_190_residues
GRKISFNKEQALNKAMHLFWEKGYDATYISDLIETMGISRSTLYDSFGDKDALFKLVLEHYKNYGSQKRNLLFSGINAKA
SLTSFFYQHIEKCYSDEIPKGCIITNSSLLIGKIDPAIEEILINDFNELEKVFKQVIEEGKRKGEISQEADTELVAYSLL
SLNHSLNIMSKYKKEKKLAYRLVDKTIADL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=173, Percent_Identity=28.9017341040462, Blast_Score=91, Evalue=5e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21911; Mature: 21780

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKISFNKEQALNKAMHLFWEKGYDATYISDLIETMGISRSTLYDSFGDKDALFKLVLE
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHH
HYKNYGSQKRNLLFSGINAKASLTSFFYQHIEKCYSDEIPKGCIITNSSLLIGKIDPAIE
HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCHHHH
EILINDFNELEKVFKQVIEEGKRKGEISQEADTELVAYSLLSLNHSLNIMSKYKKEKKLA
HHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRLVDKTIADL
HHHHHHHHHCC
>Mature Secondary Structure 
GRKISFNKEQALNKAMHLFWEKGYDATYISDLIETMGISRSTLYDSFGDKDALFKLVLE
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHH
HYKNYGSQKRNLLFSGINAKASLTSFFYQHIEKCYSDEIPKGCIITNSSLLIGKIDPAIE
HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCHHHH
EILINDFNELEKVFKQVIEEGKRKGEISQEADTELVAYSLLSLNHSLNIMSKYKKEKKLA
HHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRLVDKTIADL
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]