Click here to switch to the map view.

The map label for this gene is ycgA [H]

Identifier: 218904458

GI number: 218904458

Start: 3188095

End: 3189525

Strand: Direct

Name: ycgA [H]

Synonym: BCAH820_3342

Alternate gene names: 218904458

Gene position: 3188095-3189525 (Clockwise)

Preceding gene: 218904450

Following gene: 218904467

Centisome position: 60.12

GC content: 39.2

Gene sequence:

>1431_bases
ATGCAACTACAAACTGAAGTAAAAAAACAGCCTAGTAAACGAAAGTTTAAAATGCCTGACGCGTACGTACTACTATTTTT
TATTGCTCTGCTTTGTGCAATAGCTACGTATTTCGTTCCTGCTGGAGAATTTAAAAGAGTTACAAACGGGACTGTTACAA
CGACAATACCAGGAAGTTACCATTCTGTTCCGCAATCACCGGTAGGGTTTGTTTCTTTTTTTACCGCTATTGAAAAAGGA
ATGACACTTGCTGCTCCTATCATCTTCTTAATTTTATTTACAGGCGGTGCTATTGCGATTCTTGAAAAAACCGGTGCTCT
TGACGGTTTAATCTATCATGTTATTAACAAATTTCGTAACCAGCAATTACTTTTTATATGCATTGTCGCCGCACTCTTTT
CTATTCTCGGAACGACTGGTATTATCGTTAACTCGGTTATCGGCTTTATCCCCATCGGCATCATCGTTGCACGCACATTA
AAATGGGACGCTATCGTCGGCGTAGCAATTATTTATTTGGGCACTTATGCTGGTTTTAATGCTACTATATTATCTCCTTC
ACCTTTAGGCATTTCACAAAAGATCGCAGAACTTCCGATGTTTTCGGGAATTGGTTTACGTACAGCAATCTATCTCTCTT
TTTTACTTGCTACCATTCTATATATTAATTGGTATATAAAACGCTTAAAGAAATCGAATAAAGGAAGCATTCTCGGCGAC
AACTGGTTTCCAAGTAATGCTCTTTCAAGCGGAAAAGAGGCGCAAAAAACAGAAGTTCCTTGGACAATACGTCATAAATT
AATTTTACTCGTTTCAGCTTTATCATTAATTGCATTTTTAATCGGCGCTTTTCGTCTACATTGGACAGACGCAGAAATGA
CTGCTACTTTTATTTTCATAGCAATTACAGCCGGAATAATAGGTGGAATGAAAGCAAACGATATCGCTTCTACTTTTCTA
GCAGGCTGCCAAAATCTCATATACGGTGCTTTGATCGTCGGAATGGCTCGTTGTATTTCAGTCATTTTGGAGCAAGGGAA
ATTACTTGATACAATCGTTAACCAACTCGCACAGTCTCTCGAAGGACAAAGCCCAGTATTTGGCGTTATCGGTATGTATG
TAAGTAGTGCCGCATTACATTTCCTCATTTCATCCGGGACAGGTGAATCTGTGATTTTCATTCCGATATTAGCTCCATTA
GCTGATTTCATGCACATTACACGCCAAGTTACAGTACAAGCTGTTATGCTCGGCGAAGGTGTAGTGAACTGCCTCAATCC
AACTTCTGGTGTTTTAATGGGAGTACTCGCGGCGAGCGGTATTTCTTACGGAAAATGGATTCGATTTATGGCTCCACTTG
CATTCATTTGGTTTATTATTGGACTTATTTTTCTTATTGTTGGGGTGAATATTGAGTGGGGACCGTATTAA

Upstream 100 bases:

>100_bases
CAGAAAAACTATTGCCTTAAGAAGCCACCTTTATTATAATCTATTTCACAGATAAATTTCAGAATATTAAAAATTAACCA
AGTGAAAAAGGAGGGATTTT

Downstream 100 bases:

>100_bases
AACTATGAAACTTTCTCCCTATTATTTCACCGTTATCTTATAATAATGAAAAAAAGGATTGATTATAGTAATCAATCCTT
TTCACTTGCATCTCTCAAAG

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MQLQTEVKKQPSKRKFKMPDAYVLLFFIALLCAIATYFVPAGEFKRVTNGTVTTTIPGSYHSVPQSPVGFVSFFTAIEKG
MTLAAPIIFLILFTGGAIAILEKTGALDGLIYHVINKFRNQQLLFICIVAALFSILGTTGIIVNSVIGFIPIGIIVARTL
KWDAIVGVAIIYLGTYAGFNATILSPSPLGISQKIAELPMFSGIGLRTAIYLSFLLATILYINWYIKRLKKSNKGSILGD
NWFPSNALSSGKEAQKTEVPWTIRHKLILLVSALSLIAFLIGAFRLHWTDAEMTATFIFIAITAGIIGGMKANDIASTFL
AGCQNLIYGALIVGMARCISVILEQGKLLDTIVNQLAQSLEGQSPVFGVIGMYVSSAALHFLISSGTGESVIFIPILAPL
ADFMHITRQVTVQAVMLGEGVVNCLNPTSGVLMGVLAASGISYGKWIRFMAPLAFIWFIIGLIFLIVGVNIEWGPY

Sequences:

>Translated_476_residues
MQLQTEVKKQPSKRKFKMPDAYVLLFFIALLCAIATYFVPAGEFKRVTNGTVTTTIPGSYHSVPQSPVGFVSFFTAIEKG
MTLAAPIIFLILFTGGAIAILEKTGALDGLIYHVINKFRNQQLLFICIVAALFSILGTTGIIVNSVIGFIPIGIIVARTL
KWDAIVGVAIIYLGTYAGFNATILSPSPLGISQKIAELPMFSGIGLRTAIYLSFLLATILYINWYIKRLKKSNKGSILGD
NWFPSNALSSGKEAQKTEVPWTIRHKLILLVSALSLIAFLIGAFRLHWTDAEMTATFIFIAITAGIIGGMKANDIASTFL
AGCQNLIYGALIVGMARCISVILEQGKLLDTIVNQLAQSLEGQSPVFGVIGMYVSSAALHFLISSGTGESVIFIPILAPL
ADFMHITRQVTVQAVMLGEGVVNCLNPTSGVLMGVLAASGISYGKWIRFMAPLAFIWFIIGLIFLIVGVNIEWGPY
>Mature_476_residues
MQLQTEVKKQPSKRKFKMPDAYVLLFFIALLCAIATYFVPAGEFKRVTNGTVTTTIPGSYHSVPQSPVGFVSFFTAIEKG
MTLAAPIIFLILFTGGAIAILEKTGALDGLIYHVINKFRNQQLLFICIVAALFSILGTTGIIVNSVIGFIPIGIIVARTL
KWDAIVGVAIIYLGTYAGFNATILSPSPLGISQKIAELPMFSGIGLRTAIYLSFLLATILYINWYIKRLKKSNKGSILGD
NWFPSNALSSGKEAQKTEVPWTIRHKLILLVSALSLIAFLIGAFRLHWTDAEMTATFIFIAITAGIIGGMKANDIASTFL
AGCQNLIYGALIVGMARCISVILEQGKLLDTIVNQLAQSLEGQSPVFGVIGMYVSSAALHFLISSGTGESVIFIPILAPL
ADFMHITRQVTVQAVMLGEGVVNCLNPTSGVLMGVLAASGISYGKWIRFMAPLAFIWFIIGLIFLIVGVNIEWGPY

Specific function: Unknown

COG id: COG1288

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yfcC and H.influenzae HI_0594 [H]

Homologues:

Organism=Escherichia coli, GI87082082, Length=502, Percent_Identity=28.6852589641434, Blast_Score=185, Evalue=6e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018387
- InterPro:   IPR018385 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 51432; Mature: 51432

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLQTEVKKQPSKRKFKMPDAYVLLFFIALLCAIATYFVPAGEFKRVTNGTVTTTIPGSY
CCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCCC
HSVPQSPVGFVSFFTAIEKGMTLAAPIIFLILFTGGAIAILEKTGALDGLIYHVINKFRN
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCC
QQLLFICIVAALFSILGTTGIIVNSVIGFIPIGIIVARTLKWDAIVGVAIIYLGTYAGFN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ATILSPSPLGISQKIAELPMFSGIGLRTAIYLSFLLATILYINWYIKRLKKSNKGSILGD
EEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
NWFPSNALSSGKEAQKTEVPWTIRHKLILLVSALSLIAFLIGAFRLHWTDAEMTATFIFI
CCCCCHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHH
AITAGIIGGMKANDIASTFLAGCQNLIYGALIVGMARCISVILEQGKLLDTIVNQLAQSL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
EGQSPVFGVIGMYVSSAALHFLISSGTGESVIFIPILAPLADFMHITRQVTVQAVMLGEG
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVNCLNPTSGVLMGVLAASGISYGKWIRFMAPLAFIWFIIGLIFLIVGVNIEWGPY
HHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQLQTEVKKQPSKRKFKMPDAYVLLFFIALLCAIATYFVPAGEFKRVTNGTVTTTIPGSY
CCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCCC
HSVPQSPVGFVSFFTAIEKGMTLAAPIIFLILFTGGAIAILEKTGALDGLIYHVINKFRN
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCC
QQLLFICIVAALFSILGTTGIIVNSVIGFIPIGIIVARTLKWDAIVGVAIIYLGTYAGFN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ATILSPSPLGISQKIAELPMFSGIGLRTAIYLSFLLATILYINWYIKRLKKSNKGSILGD
EEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
NWFPSNALSSGKEAQKTEVPWTIRHKLILLVSALSLIAFLIGAFRLHWTDAEMTATFIFI
CCCCCHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHH
AITAGIIGGMKANDIASTFLAGCQNLIYGALIVGMARCISVILEQGKLLDTIVNQLAQSL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
EGQSPVFGVIGMYVSSAALHFLISSGTGESVIFIPILAPLADFMHITRQVTVQAVMLGEG
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVNCLNPTSGVLMGVLAASGISYGKWIRFMAPLAFIWFIIGLIFLIVGVNIEWGPY
HHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]