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The map label for this gene is yvaF [H]

Identifier: 218904442

GI number: 218904442

Start: 3173627

End: 3174184

Strand: Reverse

Name: yvaF [H]

Synonym: BCAH820_3326

Alternate gene names: 218904442

Gene position: 3174184-3173627 (Counterclockwise)

Preceding gene: 218904443

Following gene: 218904441

Centisome position: 59.86

GC content: 30.11

Gene sequence:

>558_bases
ATGAAACAAAGAATAGTAACAGAAACAATTCATCAAATTCAAACGAAGGGGTTTATATTTACAATTAGTGATTTAGCAAA
ACAATTAGCTGTCAGTAAGAGGACAATCTATGAGCACTTCTCTTCAAAAGATGAAATAGTAGATGAAGTTATTCGTAATG
TAATAGAAAGTATTCAAGAAAAGGAAAAAAATATCGCTGAAGATGATACGTTACAAACAGTTGAAAAAATAAGACTCATC
TTAATTTGCATTCCACAACAATTTACATTCATGGATGCACGTTTATTAGTAGAACTAAAAAAACATCATTATTACCAATG
GTTAAAATTAGATCAGTTTTTACGTGAAGGGTGGTCTACTGTAATTGGTTTAATAGAAGAGGGAATGAGAGAAGGAAGCA
TAAGAAAAATTCAAATTCCGTTTTTTATTGAAGTGTATTTAGGGGCACTGAATCGCATATATGATCCTATGTTTATTGAA
AAAAGTGATTATACGTTGGGAAGTATGCTTGAATCGATTATGGACATGTTACTATATGGCATTTCTAATTCGAAATAA

Upstream 100 bases:

>100_bases
AGAAAATTATAAAAATTAGTTGGATACATTGTGTTAAATATTGTAAAATGGAATGGTACCAAAAAAACTAAATTGGTACC
AAAGGTTCAGGGGGCGGATT

Downstream 100 bases:

>100_bases
AAGGTGGGAAAATAGTGCAGTGGATTTATTTAAGTTTAGCAATTTTATTTGAAGTAGCAGGTACAACTGCGATGAAACTA
TCTGATGGATTAACGAAACT

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKQRIVTETIHQIQTKGFIFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQEKEKNIAEDDTLQTVEKIRLI
LICIPQQFTFMDARLLVELKKHHYYQWLKLDQFLREGWSTVIGLIEEGMREGSIRKIQIPFFIEVYLGALNRIYDPMFIE
KSDYTLGSMLESIMDMLLYGISNSK

Sequences:

>Translated_185_residues
MKQRIVTETIHQIQTKGFIFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQEKEKNIAEDDTLQTVEKIRLI
LICIPQQFTFMDARLLVELKKHHYYQWLKLDQFLREGWSTVIGLIEEGMREGSIRKIQIPFFIEVYLGALNRIYDPMFIE
KSDYTLGSMLESIMDMLLYGISNSK
>Mature_185_residues
MKQRIVTETIHQIQTKGFIFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQEKEKNIAEDDTLQTVEKIRLI
LICIPQQFTFMDARLLVELKKHHYYQWLKLDQFLREGWSTVIGLIEEGMREGSIRKIQIPFFIEVYLGALNRIYDPMFIE
KSDYTLGSMLESIMDMLLYGISNSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21757; Mature: 21757

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQRIVTETIHQIQTKGFIFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQE
CCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KEKNIAEDDTLQTVEKIRLILICIPQQFTFMDARLLVELKKHHYYQWLKLDQFLREGWST
HHHCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGLIEEGMREGSIRKIQIPFFIEVYLGALNRIYDPMFIEKSDYTLGSMLESIMDMLLYG
HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHH
ISNSK
CCCCC
>Mature Secondary Structure
MKQRIVTETIHQIQTKGFIFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQE
CCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KEKNIAEDDTLQTVEKIRLILICIPQQFTFMDARLLVELKKHHYYQWLKLDQFLREGWST
HHHCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGLIEEGMREGSIRKIQIPFFIEVYLGALNRIYDPMFIEKSDYTLGSMLESIMDMLLYG
HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHH
ISNSK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]