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The map label for this gene is ycdC [C]

Identifier: 218903661

GI number: 218903661

Start: 2419105

End: 2419710

Strand: Direct

Name: ycdC [C]

Synonym: BCAH820_2545

Alternate gene names: 218903661

Gene position: 2419105-2419710 (Clockwise)

Preceding gene: 218903660

Following gene: 218903664

Centisome position: 45.62

GC content: 32.01

Gene sequence:

>606_bases
ATGGGGAAGTCTCGTGAGCAGACGATGGAAAATATTTTGAAGGCTGCTAAGAAAAAATTTGGAGAGCGTGGTTACGAAGG
TACGAGCATACAAGAAATTGCAAAAGAAGCGAAAGTAAATGTCGCTATGGCTTCATACTATTTTAATGGGAAAGAAAACC
TGTATTATGAGGTATTTAAGAAATATGGCCTTGCTAATGAGTTACCTAATTTTCTTGAGAAGAATCAATTTAATCCTATT
AATGCTCTAAGAGAATATTTAACAGTCTTTACTACACATATAAAAGAAAATCCTGAAATTGGCACATTGGCATATGAGGA
GATTATTAAGGAAAGTGCAAGATTAGAAAAGATTAAACCGTATTTTATAGGTAGTTTTGAACAGTTAAAAGAAATATTGC
AGGAAGGGGAAAAACAAGGAGTATTTCATTTCTTTTCTATAAATCATACGATACATTGGATCACTTCTATTGTTTTATTT
CCAAAGTTTAAAAAGTTCATTGATTCTTTAGGAACAAATGAAACGAATGATACAAATCATGAATGGATGCCAGAAGATTT
GGTGAGCAGGATTATTTCTGCTTTAACAGATAAGCCTAATATATGA

Upstream 100 bases:

>100_bases
ACTACTTTAAATATATAATTAAATTTCATTAAAAAGAAACTCTATTCAAATTCCTTATTGGATTTTTGAAGTGAAATATA
TATTATTTGAGGTGTGTGAA

Downstream 100 bases:

>100_bases
ATTGCTCAGTGTTTATGAATTCTAATTTTCCTATTAAAAAGCCTAATTTCTCAATGTATTGTAGAGAAATTAGGCTTTTT
CGACATTTCATTCAAATACT

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MGKSREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGLANELPNFLEKNQFNPI
NALREYLTVFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLKEILQEGEKQGVFHFFSINHTIHWITSIVLF
PKFKKFIDSLGTNETNDTNHEWMPEDLVSRIISALTDKPNI

Sequences:

>Translated_201_residues
MGKSREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGLANELPNFLEKNQFNPI
NALREYLTVFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLKEILQEGEKQGVFHFFSINHTIHWITSIVLF
PKFKKFIDSLGTNETNDTNHEWMPEDLVSRIISALTDKPNI
>Mature_200_residues
GKSREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGLANELPNFLEKNQFNPIN
ALREYLTVFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLKEILQEGEKQGVFHFFSINHTIHWITSIVLFP
KFKKFIDSLGTNETNDTNHEWMPEDLVSRIISALTDKPNI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23357; Mature: 23226

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKSREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFK
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHHH
KYGLANELPNFLEKNQFNPINALREYLTVFTTHIKENPEIGTLAYEEIIKESARLEKIKP
HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCH
YFIGSFEQLKEILQEGEKQGVFHFFSINHTIHWITSIVLFPKFKKFIDSLGTNETNDTNH
HHCCCHHHHHHHHHCCHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
EWMPEDLVSRIISALTDKPNI
CCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GKSREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHHH
KYGLANELPNFLEKNQFNPINALREYLTVFTTHIKENPEIGTLAYEEIIKESARLEKIKP
HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCH
YFIGSFEQLKEILQEGEKQGVFHFFSINHTIHWITSIVLFPKFKKFIDSLGTNETNDTNH
HHCCCHHHHHHHHHCCHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
EWMPEDLVSRIISALTDKPNI
CCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA