Click here to switch to the map view.

The map label for this gene is secY1 [H]

Identifier: 218901334

GI number: 218901334

Start: 130156

End: 131223

Strand: Direct

Name: secY1 [H]

Synonym: BCAH820_0142

Alternate gene names: 218901334

Gene position: 130156-131223 (Clockwise)

Preceding gene: 218901333

Following gene: 218901335

Centisome position: 2.45

GC content: 39.31

Gene sequence:

>1068_bases
ATGTTTCGTACAATCTCCAACTTTATGCGCGTTGCTGAGATAAGACGTAAAATATTATTCACTTTAGCGATGTTAATCGT
ATTCAGGATTGGCACGTTTATCCCCGTGCCATTTACAAATGGAGACGTACTGAAGGCACAAGATCAATTAAATGCTTTAG
GTATTCTAAATACATTTGGCGGTGGAGCCTTGAAAAACTTCTCCATCTTTGCGATGGGAATCATGCCGTATATTACAGCA
TCCATCATCGTGCAATTATTGCAGATGGATGTTGTTCCTAAATTTTCGGAATGGGCGAAGCAAGGTGAAATGGGCCGTCG
TAAATTAACGCAATTCACGCGTTATTTTACAATTGTTCTTGCGTTTATTCAGGGGTTTGGTATGTCAATCGGTTTTAACG
GTATGGTAGGTGGACAATTAATTTTGAATCCTGGTTGGAGCACTTATTTATACATTGCTACGGTACTGACTGCTGGTACT
GCATTTTTAATGTGGTTAGGTGAACAGATTACAGCTAAAGGTGTAGGTAATGGTATTTCCATTCTTATCTTTGGTGGTAT
TGCCGCAGCGATCCCAAGTGTTATATCTCAAGTGTATCAGCAACAGTTTCAAAATATCGGAGATCAATTGTTCATGAGTA
TCGTTAAAGTTGCATTGATCTTACTAGCTGTGCTAGCAGTTATTGTGGGTGTTATTTTCATTCAACAGGCTGTTAGAAAG
ATCCCAATTCAATATGCGAAGCGTGTAACAGGAGGAAATGGTGGTTATGCTGGAGCACAAAACACACATTTACCGCTTAA
GGTAAATAGTGCTGGTGTTATTCCAGTAATTTTTGCTGTTTCATTCTTAATTACGCCTCCGACTATTGCACAGTTCTTCC
CGAAACATGATGTATCGCAGTGGATTATTGCAAACTTTAACTATTCTCACCCAGTGGGAATGATCATATATGTTGCGCTC
ATTGTAGCCTTCACATATTTCTATGCATTTGTTCAGKTTAATCCAGAGCAAATGTCAGAGAATCTAAACCAAMCAAGGTG
GATATGTTCCAGGTATTCGTCCGGGTAA

Upstream 100 bases:

>100_bases
GCGGCGCAGTAGAGAAAAAACTAACTGTTAAAGCGCACAAGTTCTCTTCAAGTGCTAAAGAAGCAATTGAAGCAGCTGGC
GGATCAGTTGAGGTGATCTA

Downstream 100 bases:

>100_bases
GAATACGGAACAATATCTAACAAAAATCTTGTATCGTTTGACCTTTGTAGGATCAATTTTCCTAGCAGCGATTGCAATCT
TACCAGTTATCTTTACGAAG

Product: preprotein translocase, SecY subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPFTNGDVLKAQDQLNALGILNTFGGGALKNFSIFAMGIMPYITA
SIIVQLLQMDVVPKFSEWAKQGEMGRRKLTQFTRYFTIVLAFIQGFGMSIGFNGMVGGQLILNPGWSTYLYIATVLTAGT
AFLMWLGEQITAKGVGNGISILIFGGIAAAIPSVISQVYQQQFQNIGDQLFMSIVKVALILLAVLAVIVGVIFIQQAVRK
IPIQYAKRVTGGNGGYAGAQNTHLPLKVNSAGVIPVIFAVSFLITPPTIAQFFPKHDVSQWIIANFNYSHPVGMIIYVAL
IVAFTYFYAFVQXNPEQMSENLNQXRWICSRYSSG

Sequences:

>Translated_355_residues
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPFTNGDVLKAQDQLNALGILNTFGGGALKNFSIFAMGIMPYITA
SIIVQLLQMDVVPKFSEWAKQGEMGRRKLTQFTRYFTIVLAFIQGFGMSIGFNGMVGGQLILNPGWSTYLYIATVLTAGT
AFLMWLGEQITAKGVGNGISILIFGGIAAAIPSVISQVYQQQFQNIGDQLFMSIVKVALILLAVLAVIVGVIFIQQAVRK
IPIQYAKRVTGGNGGYAGAQNTHLPLKVNSAGVIPVIFAVSFLITPPTIAQFFPKHDVSQWIIANFNYSHPVGMIIYVAL
IVAFTYFYAFVQXNPEQMSENLNQXRWICSRYSSG
>Mature_355_residues
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPFTNGDVLKAQDQLNALGILNTFGGGALKNFSIFAMGIMPYITA
SIIVQLLQMDVVPKFSEWAKQGEMGRRKLTQFTRYFTIVLAFIQGFGMSIGFNGMVGGQLILNPGWSTYLYIATVLTAGT
AFLMWLGEQITAKGVGNGISILIFGGIAAAIPSVISQVYQQQFQNIGDQLFMSIVKVALILLAVLAVIVGVIFIQQAVRK
IPIQYAKRVTGGNGGYAGAQNTHLPLKVNSAGVIPVIFAVSFLITPPTIAQFFPKHDVSQWIIANFNYSHPVGMIIYVAL
IVAFTYFYAFVQXNPEQMSENLNQXRWICSRYSSG

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=341, Percent_Identity=44.574780058651, Blast_Score=225, Evalue=3e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 39012; Mature: 39012

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPFTNGDVLKAQDQLNALGILNTFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHCC
GGALKNFSIFAMGIMPYITASIIVQLLQMDVVPKFSEWAKQGEMGRRKLTQFTRYFTIVL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AFIQGFGMSIGFNGMVGGQLILNPGWSTYLYIATVLTAGTAFLMWLGEQITAKGVGNGIS
HHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
ILIFGGIAAAIPSVISQVYQQQFQNIGDQLFMSIVKVALILLAVLAVIVGVIFIQQAVRK
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPIQYAKRVTGGNGGYAGAQNTHLPLKVNSAGVIPVIFAVSFLITPPTIAQFFPKHDVSQ
CCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCH
WIIANFNYSHPVGMIIYVALIVAFTYFYAFVQXNPEQMSENLNQXRWICSRYSSG
HHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPFTNGDVLKAQDQLNALGILNTFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHCC
GGALKNFSIFAMGIMPYITASIIVQLLQMDVVPKFSEWAKQGEMGRRKLTQFTRYFTIVL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AFIQGFGMSIGFNGMVGGQLILNPGWSTYLYIATVLTAGTAFLMWLGEQITAKGVGNGIS
HHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
ILIFGGIAAAIPSVISQVYQQQFQNIGDQLFMSIVKVALILLAVLAVIVGVIFIQQAVRK
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPIQYAKRVTGGNGGYAGAQNTHLPLKVNSAGVIPVIFAVSFLITPPTIAQFFPKHDVSQ
CCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCH
WIIANFNYSHPVGMIIYVALIVAFTYFYAFVQXNPEQMSENLNQXRWICSRYSSG
HHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1435726 [H]