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The map label for this gene is yvrC [H]

Identifier: 218884759

GI number: 218884759

Start: 1342055

End: 1343086

Strand: Reverse

Name: yvrC [H]

Synonym: DKAM_1448

Alternate gene names: 218884759

Gene position: 1343086-1342055 (Counterclockwise)

Preceding gene: 218884760

Following gene: 218884758

Centisome position: 98.38

GC content: 40.79

Gene sequence:

>1032_bases
ATGTCCAAGCAGATTAAATACGGGTATATAATAATACTTGCCCTACTTATAGTTGCAAGTATCCCTGTAAAAGCCGGAAT
AGTAGTGCAGGATGCTACAGGGAGAACCATAAGTCTTAGTGAAACACCATCTAAAATAGTTTCCCTCAGCCCCTCCATCA
CGGAGATCCTTGCTTACCTGGATGAACTAGATAGAGTAGTGGGGGCTGATTCAATATCGTTGAGCGATACATGGTTTAAC
GTCTCAAGCATTCTCAAGACACATGGTGTAATTGATGTCGGCGGGTACTGGTGGTCAACTGTAAGAGCCGAAGAAATACT
CAGGATCAACCCTGATATAGTTTTAGCTGATAAAGGGGCTCATGTTCCATTATTAGATTTCTTCAAGAACTATAATATTA
CCGTAGTATACTTGGCTGGTGGTTCATCTAAAAGCATACAAGATGTTTTAAGCGACTTCTACACCATTGCTACGCTCTTA
AATAAGACTAGCCTAGCCGACGACTTCACCATCAAACTAGAGAGTGAACTAGGTAAATACAGGGATCTAATAACTAGTAA
ATACAAGGGTGTCAAAGTATTAATCATAGTGGATTTAACAAGTGGTATATGGGTTGCTGGCAAAGGAACATACATAGATG
ACATACTTGAAAGACTGGGTTTATCGAATGCCTGTAGCAATATATATTCATGGTCATCCATAAGCCTCGAGAAGGTAGTC
GAGTTGGATCCAGACATCATAGTAGTTACATACATCGGTCCCAACTCTAATACGTTAAAAGAGAGCGGGCTAACTAATCT
GGGTAAACCCATTATTGTATTAAACCAGACGGAAACAGATATAATCTCGAGGCCGGGACCCCTTATAATATATGCGCCCC
AGGTAATCTATAATGTTTTAACACGGTCAAATATTGCTCGTGTAACCAGTAGTGAAGGGTCATCAACATACTCAGTCATG
GCGATCATTGTACTCGTCGCTTCAGTAGCGTTGATTACCATGGTGCTTGCAAAGAGGTATTGGAGGAAATGA

Upstream 100 bases:

>100_bases
AACATGGATCACCACATTACATTTCATCTAATTTGGTCTATCTCTTCCTGGAAATGTTTTTAAGATGTATAGCTTCTAGT
ATTGTTTGGTGTTGGACAAA

Downstream 100 bases:

>100_bases
AGCAAAGAGATCTCTGGCTTCTAGGCCTACTACTTGTTTTTTCCATAATGCTAATATACGATCTCAACGATGTTCAACAC
AATTCATTATTATTTAACTA

Product: Iron compound ABC-type transporter, periplasmic component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MSKQIKYGYIIILALLIVASIPVKAGIVVQDATGRTISLSETPSKIVSLSPSITEILAYLDELDRVVGADSISLSDTWFN
VSSILKTHGVIDVGGYWWSTVRAEEILRINPDIVLADKGAHVPLLDFFKNYNITVVYLAGGSSKSIQDVLSDFYTIATLL
NKTSLADDFTIKLESELGKYRDLITSKYKGVKVLIIVDLTSGIWVAGKGTYIDDILERLGLSNACSNIYSWSSISLEKVV
ELDPDIIVVTYIGPNSNTLKESGLTNLGKPIIVLNQTETDIISRPGPLIIYAPQVIYNVLTRSNIARVTSSEGSSTYSVM
AIIVLVASVALITMVLAKRYWRK

Sequences:

>Translated_343_residues
MSKQIKYGYIIILALLIVASIPVKAGIVVQDATGRTISLSETPSKIVSLSPSITEILAYLDELDRVVGADSISLSDTWFN
VSSILKTHGVIDVGGYWWSTVRAEEILRINPDIVLADKGAHVPLLDFFKNYNITVVYLAGGSSKSIQDVLSDFYTIATLL
NKTSLADDFTIKLESELGKYRDLITSKYKGVKVLIIVDLTSGIWVAGKGTYIDDILERLGLSNACSNIYSWSSISLEKVV
ELDPDIIVVTYIGPNSNTLKESGLTNLGKPIIVLNQTETDIISRPGPLIIYAPQVIYNVLTRSNIARVTSSEGSSTYSVM
AIIVLVASVALITMVLAKRYWRK
>Mature_342_residues
SKQIKYGYIIILALLIVASIPVKAGIVVQDATGRTISLSETPSKIVSLSPSITEILAYLDELDRVVGADSISLSDTWFNV
SSILKTHGVIDVGGYWWSTVRAEEILRINPDIVLADKGAHVPLLDFFKNYNITVVYLAGGSSKSIQDVLSDFYTIATLLN
KTSLADDFTIKLESELGKYRDLITSKYKGVKVLIIVDLTSGIWVAGKGTYIDDILERLGLSNACSNIYSWSSISLEKVVE
LDPDIIVVTYIGPNSNTLKESGLTNLGKPIIVLNQTETDIISRPGPLIIYAPQVIYNVLTRSNIARVTSSEGSSTYSVMA
IIVLVASVALITMVLAKRYWRK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 37500; Mature: 37369

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQIKYGYIIILALLIVASIPVKAGIVVQDATGRTISLSETPSKIVSLSPSITEILAYL
CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCHHHEECCCCHHHHHHHH
DELDRVVGADSISLSDTWFNVSSILKTHGVIDVGGYWWSTVRAEEILRINPDIVLADKGA
HHHHHHHCCCCCEECCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHEEECCCEEEECCCC
HVPLLDFFKNYNITVVYLAGGSSKSIQDVLSDFYTIATLLNKTSLADDFTIKLESELGKY
CCCHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH
RDLITSKYKGVKVLIIVDLTSGIWVAGKGTYIDDILERLGLSNACSNIYSWSSISLEKVV
HHHHHHCCCCEEEEEEEEECCCEEEECCCCHHHHHHHHCCCCHHHHHHCCCCCCCHHHHH
ELDPDIIVVTYIGPNSNTLKESGLTNLGKPIIVLNQTETDIISRPGPLIIYAPQVIYNVL
CCCCCEEEEEEECCCCCCHHHCCCCCCCCCEEEEECCCHHHHCCCCCEEEECHHHHHHHH
TRSNIARVTSSEGSSTYSVMAIIVLVASVALITMVLAKRYWRK
HCCHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKQIKYGYIIILALLIVASIPVKAGIVVQDATGRTISLSETPSKIVSLSPSITEILAYL
CCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCHHHEECCCCHHHHHHHH
DELDRVVGADSISLSDTWFNVSSILKTHGVIDVGGYWWSTVRAEEILRINPDIVLADKGA
HHHHHHHCCCCCEECCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHEEECCCEEEECCCC
HVPLLDFFKNYNITVVYLAGGSSKSIQDVLSDFYTIATLLNKTSLADDFTIKLESELGKY
CCCHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH
RDLITSKYKGVKVLIIVDLTSGIWVAGKGTYIDDILERLGLSNACSNIYSWSSISLEKVV
HHHHHHCCCCEEEEEEEEECCCEEEECCCCHHHHHHHHCCCCHHHHHHCCCCCCCHHHHH
ELDPDIIVVTYIGPNSNTLKESGLTNLGKPIIVLNQTETDIISRPGPLIIYAPQVIYNVL
CCCCCEEEEEEECCCCCCHHHCCCCCCCCCEEEEECCCHHHHCCCCCEEEECHHHHHHHH
TRSNIARVTSSEGSSTYSVMAIIVLVASVALITMVLAKRYWRK
HCCHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]