Click here to switch to the map view.

The map label for this gene is rpl21e [H]

Identifier: 218884719

GI number: 218884719

Start: 1308806

End: 1309132

Strand: Reverse

Name: rpl21e [H]

Synonym: DKAM_1408

Alternate gene names: 218884719

Gene position: 1309132-1308806 (Counterclockwise)

Preceding gene: 218884720

Following gene: 218884718

Centisome position: 95.89

GC content: 45.26

Gene sequence:

>327_bases
GTGGAAAAGATGGTTAAAGCACCAAAGGGGTATAGGCATAGAACCAGGAAGCTCTTCAAGAAGAATGTCAGGGAGAAGGG
GTCGATACCGCCTCTAAGCCTAGTGCTAAGAGAGTATAAAGAGGGGGAGAAGGTACACATAGTTATCAATCCATCAGTAT
ACAGGGGAATGCCGTATAGGAGGTTCCATGGAAAAACCGGTGTAGTACTTGGAAAACGTGGAAGAGCCTATATTGTTAAA
GTGATGATGGGGGATAAGGAGAAGATATTGTTTATAAGGCCAGAGCACATGAGACCCTTAAACATCCCTCAGGCACAGCA
AGCCTGA

Upstream 100 bases:

>100_bases
TTTATATTGAGAAGACATGGGATAAATAACTTTATAAGCTGGTTACAGGGGATTTTAGATATAGCGTGTCCAATGGATGC
TTAAGCCTGCAGTATGAAAG

Downstream 100 bases:

>100_bases
CCCGTAAACATTAATATTCCTAGTGCTTATAACTATATGGTGGTGACCAGTATTGTCGAATACCATAGTATTAAAAGCAA
TAGAGGAGAAACAGTTGTCA

Product: 50S ribosomal protein L21e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MEKMVKAPKGYRHRTRKLFKKNVREKGSIPPLSLVLREYKEGEKVHIVINPSVYRGMPYRRFHGKTGVVLGKRGRAYIVK
VMMGDKEKILFIRPEHMRPLNIPQAQQA

Sequences:

>Translated_108_residues
MEKMVKAPKGYRHRTRKLFKKNVREKGSIPPLSLVLREYKEGEKVHIVINPSVYRGMPYRRFHGKTGVVLGKRGRAYIVK
VMMGDKEKILFIRPEHMRPLNIPQAQQA
>Mature_108_residues
MEKMVKAPKGYRHRTRKLFKKNVREKGSIPPLSLVLREYKEGEKVHIVINPSVYRGMPYRRFHGKTGVVLGKRGRAYIVK
VMMGDKEKILFIRPEHMRPLNIPQAQQA

Specific function: Unknown

COG id: COG2139

COG function: function code J; Ribosomal protein L21E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21e family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6319668, Length=93, Percent_Identity=40.8602150537634, Blast_Score=63, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6325178, Length=93, Percent_Identity=39.7849462365591, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001147
- InterPro:   IPR022856
- InterPro:   IPR018259
- InterPro:   IPR008991 [H]

Pfam domain/function: PF01157 Ribosomal_L21e [H]

EC number: NA

Molecular weight: Translated: 12639; Mature: 12639

Theoretical pI: Translated: 11.42; Mature: 11.42

Prosite motif: PS01171 RIBOSOMAL_L21E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKMVKAPKGYRHRTRKLFKKNVREKGSIPPLSLVLREYKEGEKVHIVINPSVYRGMPYR
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCHHHCCCCCC
RFHGKTGVVLGKRGRAYIVKVMMGDKEKILFIRPEHMRPLNIPQAQQA
EECCCCCEEEECCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEKMVKAPKGYRHRTRKLFKKNVREKGSIPPLSLVLREYKEGEKVHIVINPSVYRGMPYR
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCHHHCCCCCC
RFHGKTGVVLGKRGRAYIVKVMMGDKEKILFIRPEHMRPLNIPQAQQA
EECCCCCEEEECCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA