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The map label for this gene is 218884637

Identifier: 218884637

GI number: 218884637

Start: 1237686

End: 1238381

Strand: Reverse

Name: 218884637

Synonym: DKAM_1326

Alternate gene names: NA

Gene position: 1238381-1237686 (Counterclockwise)

Preceding gene: 218884638

Following gene: 218884636

Centisome position: 90.71

GC content: 43.25

Gene sequence:

>696_bases
ATGAAAGATAAACTAGTCATCGCACGCTACGAGGCTAAAGGACATAGATTCGAGATCCTGGTCGACCCTGAGTTAGCGCT
TAAGATTAAGGAGGGAAAACAGATAAGTATAGATGAAGTTGTGGCTGGAGACTTCATCTATAAAGACGCTAGAAAAGGGT
TAAAGGCCTCACCGGAGTCGATGAAGGAGGTTTTTGGAACAGATGATCCCAAGGTAGTAGCAGTGGAGATTATAAAACGC
GGTGAACTACAGCTCACAGCCGAACAGAGAAGAAAGTTTATTGAGGAAAAGAGGGCACAGATATTAAACTTGATCGCTAG
AAACGCTATAGATCCCAAGACGAAACTACCTATCCCAGTGAAAAGGCTTGAATTGGCGATGGAGCAAGCAAGGATATCAA
TAGACCCATATAAGCCAGCTGAGCAGCAAATGGAACATATTGTTTCACAGCTAGCCAAGGTTATACCTATAAAAATAGCT
AAGGCTTATGTCGCTGTAAGAATACCGAGCGAATATGCTAGTAGATCGCTTAAACAAATACAGGCAATGGGGACAACTAA
GAAGGTCCAGTGGCGTGAAGACGGGAGCTTATATGTGGAGCTAGAGATTCCGGCTGGATTGCAACAAGAGTTAATAGATA
AAGTCAACGCTTTAACAAAGGGTAGCGGGGAAGTTAAGATATTGAACGTGGGGTGA

Upstream 100 bases:

>100_bases
CGAATGAAATAAGGAAGTATATTGAGGAATTGGAGAAAGAAGGAAAGCTAAAGATGTAGAATATATCACGGAGCCAAACC
CTATATGAGGTTTTTAAGCC

Downstream 100 bases:

>100_bases
GAGATCGATGAAGGTTCTAGTAGCTGATAGACAGTTAGTGAGACCGGGAGACTGCCTCGCGATACTTGAGGAAGGCATTA
TCTCAAATGAGATCAAGAGG

Product: putative RNA-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKDKLVIARYEAKGHRFEILVDPELALKIKEGKQISIDEVVAGDFIYKDARKGLKASPESMKEVFGTDDPKVVAVEIIKR
GELQLTAEQRRKFIEEKRAQILNLIARNAIDPKTKLPIPVKRLELAMEQARISIDPYKPAEQQMEHIVSQLAKVIPIKIA
KAYVAVRIPSEYASRSLKQIQAMGTTKKVQWREDGSLYVELEIPAGLQQELIDKVNALTKGSGEVKILNVG

Sequences:

>Translated_231_residues
MKDKLVIARYEAKGHRFEILVDPELALKIKEGKQISIDEVVAGDFIYKDARKGLKASPESMKEVFGTDDPKVVAVEIIKR
GELQLTAEQRRKFIEEKRAQILNLIARNAIDPKTKLPIPVKRLELAMEQARISIDPYKPAEQQMEHIVSQLAKVIPIKIA
KAYVAVRIPSEYASRSLKQIQAMGTTKKVQWREDGSLYVELEIPAGLQQELIDKVNALTKGSGEVKILNVG
>Mature_231_residues
MKDKLVIARYEAKGHRFEILVDPELALKIKEGKQISIDEVVAGDFIYKDARKGLKASPESMKEVFGTDDPKVVAVEIIKR
GELQLTAEQRRKFIEEKRAQILNLIARNAIDPKTKLPIPVKRLELAMEQARISIDPYKPAEQQMEHIVSQLAKVIPIKIA
KAYVAVRIPSEYASRSLKQIQAMGTTKKVQWREDGSLYVELEIPAGLQQELIDKVNALTKGSGEVKILNVG

Specific function: Unknown

COG id: COG1500

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDO1/SBDS family [H]

Homologues:

Organism=Homo sapiens, GI28416940, Length=227, Percent_Identity=25.1101321585903, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI25144459, Length=226, Percent_Identity=25.6637168141593, Blast_Score=87, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6323050, Length=164, Percent_Identity=28.0487804878049, Blast_Score=62, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24659572, Length=213, Percent_Identity=23.4741784037559, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009022
- InterPro:   IPR018978
- InterPro:   IPR018023
- InterPro:   IPR019783
- InterPro:   IPR002140 [H]

Pfam domain/function: PF01172 SBDS; PF09377 SBDS_C [H]

EC number: NA

Molecular weight: Translated: 25980; Mature: 25980

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDKLVIARYEAKGHRFEILVDPELALKIKEGKQISIDEVVAGDFIYKDARKGLKASPES
CCCCEEEEEEECCCCEEEEEECCCEEEEECCCCEECHHHHHHHHHHHHHHHCCCCCCHHH
MKEVFGTDDPKVVAVEIIKRGELQLTAEQRRKFIEEKRAQILNLIARNAIDPKTKLPIPV
HHHHHCCCCCCEEEEEEHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
KRLELAMEQARISIDPYKPAEQQMEHIVSQLAKVIPIKIAKAYVAVRIPSEYASRSLKQI
HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHH
QAMGTTKKVQWREDGSLYVELEIPAGLQQELIDKVNALTKGSGEVKILNVG
HHHCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECC
>Mature Secondary Structure
MKDKLVIARYEAKGHRFEILVDPELALKIKEGKQISIDEVVAGDFIYKDARKGLKASPES
CCCCEEEEEEECCCCEEEEEECCCEEEEECCCCEECHHHHHHHHHHHHHHHCCCCCCHHH
MKEVFGTDDPKVVAVEIIKRGELQLTAEQRRKFIEEKRAQILNLIARNAIDPKTKLPIPV
HHHHHCCCCCCEEEEEEHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
KRLELAMEQARISIDPYKPAEQQMEHIVSQLAKVIPIKIAKAYVAVRIPSEYASRSLKQI
HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHH
QAMGTTKKVQWREDGSLYVELEIPAGLQQELIDKVNALTKGSGEVKILNVG
HHHCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]