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The map label for this gene is albA1 [H]

Identifier: 218884542

GI number: 218884542

Start: 1151270

End: 1151533

Strand: Reverse

Name: albA1 [H]

Synonym: DKAM_1231

Alternate gene names: 218884542

Gene position: 1151533-1151270 (Counterclockwise)

Preceding gene: 218884543

Following gene: 218884541

Centisome position: 84.35

GC content: 45.08

Gene sequence:

>264_bases
GTGCTAGTAGGTAAGAAGCCTGTAATGAACTATGTTATTGCAGTATTAACTCTGGTGCACCAGGGTGTAAGAGAGATATA
TATCAAGGCTCGTGGAAGAGCCATCAGCAAGGCGGTTGACACCGTAGAGATAGTGAAGAACAGGTTCCTACCAGGCAAGG
TCGATGTAGAAGAGATAAAGATTGGCAGCCAGACAGTGACCAACCCGCAGGGAAGAGAATCCAGGGTCAGTATCATTGAG
ATAAAGATAAAGGTAAAGGAGTAA

Upstream 100 bases:

>100_bases
AAGCGAAAAGTTTTTATAGAACCCCCTTTATTTCAAAAATCCCAGTATATAATCTAAGGAAGAGGTGGAATATATGGCGC
AACCACAAAGTGCAAACACC

Downstream 100 bases:

>100_bases
ACACTGTATTTTTACAGTTTTTCCCAACTCATTAACCATTCACCAGAAGCCGGCTGTAGGAGATGCCTAGGATATTCTCG
GGTTCAATACTAATAGAGCC

Product: DNA/RNA-binding protein albA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MLVGKKPVMNYVIAVLTLVHQGVREIYIKARGRAISKAVDTVEIVKNRFLPGKVDVEEIKIGSQTVTNPQGRESRVSIIE
IKIKVKE

Sequences:

>Translated_87_residues
MLVGKKPVMNYVIAVLTLVHQGVREIYIKARGRAISKAVDTVEIVKNRFLPGKVDVEEIKIGSQTVTNPQGRESRVSIIE
IKIKVKE
>Mature_87_residues
MLVGKKPVMNYVIAVLTLVHQGVREIYIKARGRAISKAVDTVEIVKNRFLPGKVDVEEIKIGSQTVTNPQGRESRVSIIE
IKIKVKE

Specific function: Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May

COG id: COG1581

COG function: function code K; Archaeal DNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Probable). Chromosome (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone-like Alba family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013795
- InterPro:   IPR002775 [H]

Pfam domain/function: PF01918 Alba [H]

EC number: NA

Molecular weight: Translated: 9727; Mature: 9727

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVGKKPVMNYVIAVLTLVHQGVREIYIKARGRAISKAVDTVEIVKNRFLPGKVDVEEIK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHEE
IGSQTVTNPQGRESRVSIIEIKIKVKE
CCCCCCCCCCCCCCCEEEEEEEEEECC
>Mature Secondary Structure
MLVGKKPVMNYVIAVLTLVHQGVREIYIKARGRAISKAVDTVEIVKNRFLPGKVDVEEIK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHEE
IGSQTVTNPQGRESRVSIIEIKIKVKE
CCCCCCCCCCCCCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]