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The map label for this gene is rtcB [C]

Identifier: 218884521

GI number: 218884521

Start: 1131237

End: 1132685

Strand: Reverse

Name: rtcB [C]

Synonym: DKAM_1210

Alternate gene names: 218884521

Gene position: 1132685-1131237 (Counterclockwise)

Preceding gene: 218884522

Following gene: 218884520

Centisome position: 82.97

GC content: 48.59

Gene sequence:

>1449_bases
ATGACCAGGATAAGTCTTGAGAAAATAAGCGAGTATGAGTGGAAGATACCTAGGAAGTATAAGCCCTGTATGAAGACTGA
CGCTGTGGTCTTCGCGGATGAATACCTGCTCGATAAAATGGAGAGCGATTTAACTTTAGAGCAAGCGGCAAATGTTGCAT
GCCTGCCAGGTATAAGGCTATACTCGTATGTGATGCCCGATGGACACCAGGGCTACGGGTTCCCAATAGGGGGAGTAGCA
GGCTTCGATATCGAGGAGGGTGTGATAAGTCCTGGAGGAGTCGGATACGATATTAATTGTGGAGTAAGAGTGTTAAGGAC
CGAGTTGGATATAGAAGATGTTAAACCCCGCTTAAAAGACCTCGTTGAGGCGTTATTTAGGAATGTACCAAGCGGTGTCG
GCTCCACGGGGCATTTAAGGCTGAGCTTTAACGAGCTCGACGACGTGTTAAATAGGGGTGTTGAATGGGCTGTAGAAGCC
GGGTTCGGGTGGAAGAGGGATTTAGAACACATCGAGGAAAACGGTAGGATGAAGAGTGCTGATGCCAGCAAGGTGAGTAA
GGTAGCCAAGGAGAGAGGTCATGAACAACTGGGCACACTTGGCGCGGGCAACCACTTCCTCGAGATACAGGTGGTTGAGG
AGATATATGATCCCGAGGCCGCTAAGGTGATGGGTATAACGAGAATAGGGCAGGTCACATTAATGATCCATACTGGTAGC
AGGGGTCTCGGGCATCAGGTGGCAAGTGATTACTTGATGATAATGGAGAGGGCGATGAGGAAGTATGGTATACAGGTACC
TGATAGAGAGCTCGCAGCACTACCATTTCAATCCAATGAGGCACAGGACTACTTTAAAGCCATGTCGGCTGCAGCGAACT
TCGCCTGGGCTAACAGGCAGATTATAACGCATTGGACAAGGGAGAGCTTTAAGCAAGTGTTCAAGAAGGATCCGGAGGCC
CTTGGAATAGAAATAATATATGATGTAGCACATAATATTGCTAAGATCGAGGAACATGTTGTAAATGGCGAGAGATACAA
GGTAGTAGTACACAGGAAAGGAGCTACAAGGGCGTTTCCACCCGGTCACCCCGATATACCTGGCGATTACAAGTCTATAG
GTCAACCTGTGTTGATACCTGGTAGTATGGGCACTGCAAGCTACATACTCCTGGGTACGGAGAGTGGGGCAAGGACATGG
TATAGTGCTCCACATGGGGCGGGTAGATGGCTCAGCCGTGGAGATGCCATCAGATCCTATAGCCCAGATAAAGTAATGGA
TGAGTTGGGCAGGAAGGGAGTAGTATTGAAGGCGGCTACTAGGAGAGTTATAAGTGAGGAGGCCCCCGGGGCATACAAGG
ATGTTGACAGGGTTGTATTAGTAGCACAAAAAGTAGGGATTGCAAGGCCCATCGTGAAGATGCGTCCAATAGGTGTTGTA
AAAGGATAA

Upstream 100 bases:

>100_bases
GCAGCCCCAGGATGATGCGGGCTAGACAATGTTCTACCCGTGTTTATTAAAACCCATTTACATAAACCATAATTATAGAG
TTGTAAAAAGGTGCATTTCT

Downstream 100 bases:

>100_bases
CGAGTACTCATCCATATGTTTTTCTATACCTGGACCTTAGAGCGCTATGGATAATTTGGTGATCCCCACACTAACTCATT
AAATATAAGATATCTAGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MTRISLEKISEYEWKIPRKYKPCMKTDAVVFADEYLLDKMESDLTLEQAANVACLPGIRLYSYVMPDGHQGYGFPIGGVA
GFDIEEGVISPGGVGYDINCGVRVLRTELDIEDVKPRLKDLVEALFRNVPSGVGSTGHLRLSFNELDDVLNRGVEWAVEA
GFGWKRDLEHIEENGRMKSADASKVSKVAKERGHEQLGTLGAGNHFLEIQVVEEIYDPEAAKVMGITRIGQVTLMIHTGS
RGLGHQVASDYLMIMERAMRKYGIQVPDRELAALPFQSNEAQDYFKAMSAAANFAWANRQIITHWTRESFKQVFKKDPEA
LGIEIIYDVAHNIAKIEEHVVNGERYKVVVHRKGATRAFPPGHPDIPGDYKSIGQPVLIPGSMGTASYILLGTESGARTW
YSAPHGAGRWLSRGDAIRSYSPDKVMDELGRKGVVLKAATRRVISEEAPGAYKDVDRVVLVAQKVGIARPIVKMRPIGVV
KG

Sequences:

>Translated_482_residues
MTRISLEKISEYEWKIPRKYKPCMKTDAVVFADEYLLDKMESDLTLEQAANVACLPGIRLYSYVMPDGHQGYGFPIGGVA
GFDIEEGVISPGGVGYDINCGVRVLRTELDIEDVKPRLKDLVEALFRNVPSGVGSTGHLRLSFNELDDVLNRGVEWAVEA
GFGWKRDLEHIEENGRMKSADASKVSKVAKERGHEQLGTLGAGNHFLEIQVVEEIYDPEAAKVMGITRIGQVTLMIHTGS
RGLGHQVASDYLMIMERAMRKYGIQVPDRELAALPFQSNEAQDYFKAMSAAANFAWANRQIITHWTRESFKQVFKKDPEA
LGIEIIYDVAHNIAKIEEHVVNGERYKVVVHRKGATRAFPPGHPDIPGDYKSIGQPVLIPGSMGTASYILLGTESGARTW
YSAPHGAGRWLSRGDAIRSYSPDKVMDELGRKGVVLKAATRRVISEEAPGAYKDVDRVVLVAQKVGIARPIVKMRPIGVV
KG
>Mature_481_residues
TRISLEKISEYEWKIPRKYKPCMKTDAVVFADEYLLDKMESDLTLEQAANVACLPGIRLYSYVMPDGHQGYGFPIGGVAG
FDIEEGVISPGGVGYDINCGVRVLRTELDIEDVKPRLKDLVEALFRNVPSGVGSTGHLRLSFNELDDVLNRGVEWAVEAG
FGWKRDLEHIEENGRMKSADASKVSKVAKERGHEQLGTLGAGNHFLEIQVVEEIYDPEAAKVMGITRIGQVTLMIHTGSR
GLGHQVASDYLMIMERAMRKYGIQVPDRELAALPFQSNEAQDYFKAMSAAANFAWANRQIITHWTRESFKQVFKKDPEAL
GIEIIYDVAHNIAKIEEHVVNGERYKVVVHRKGATRAFPPGHPDIPGDYKSIGQPVLIPGSMGTASYILLGTESGARTWY
SAPHGAGRWLSRGDAIRSYSPDKVMDELGRKGVVLKAATRRVISEEAPGAYKDVDRVVLVAQKVGIARPIVKMRPIGVVK
G

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=494, Percent_Identity=48.9878542510121, Blast_Score=481, Evalue=1e-136,
Organism=Escherichia coli, GI2367224, Length=443, Percent_Identity=31.6027088036117, Blast_Score=162, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI17506665, Length=494, Percent_Identity=48.582995951417, Blast_Score=471, Evalue=1e-133,
Organism=Drosophila melanogaster, GI24585217, Length=494, Percent_Identity=48.9878542510121, Blast_Score=464, Evalue=1e-131,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 53318; Mature: 53187

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRISLEKISEYEWKIPRKYKPCMKTDAVVFADEYLLDKMESDLTLEQAANVACLPGIRL
CCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCHHHHCCEEECCCHHH
YSYVMPDGHQGYGFPIGGVAGFDIEEGVISPGGVGYDINCGVRVLRTELDIEDVKPRLKD
HEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEECCCCEEEEEECCCHHHHHHHHHH
LVEALFRNVPSGVGSTGHLRLSFNELDDVLNRGVEWAVEAGFGWKRDLEHIEENGRMKSA
HHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCC
DASKVSKVAKERGHEQLGTLGAGNHFLEIQVVEEIYDPEAAKVMGITRIGQVTLMIHTGS
HHHHHHHHHHHCCHHHHCCCCCCCEEEEEEEHHHHHCCCHHHHHEEEEECEEEEEEECCC
RGLGHQVASDYLMIMERAMRKYGIQVPDRELAALPFQSNEAQDYFKAMSAAANFAWANRQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCH
IITHWTRESFKQVFKKDPEALGIEIIYDVAHNIAKIEEHVVNGERYKVVVHRKGATRAFP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
PGHPDIPGDYKSIGQPVLIPGSMGTASYILLGTESGARTWYSAPHGAGRWLSRGDAIRSY
CCCCCCCCCHHHCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHCC
SPDKVMDELGRKGVVLKAATRRVISEEAPGAYKDVDRVVLVAQKVGIARPIVKMRPIGVV
CCHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC
KG
CC
>Mature Secondary Structure 
TRISLEKISEYEWKIPRKYKPCMKTDAVVFADEYLLDKMESDLTLEQAANVACLPGIRL
CCCCHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCHHHHCCEEECCCHHH
YSYVMPDGHQGYGFPIGGVAGFDIEEGVISPGGVGYDINCGVRVLRTELDIEDVKPRLKD
HEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEECCCCEEEEEECCCHHHHHHHHHH
LVEALFRNVPSGVGSTGHLRLSFNELDDVLNRGVEWAVEAGFGWKRDLEHIEENGRMKSA
HHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCC
DASKVSKVAKERGHEQLGTLGAGNHFLEIQVVEEIYDPEAAKVMGITRIGQVTLMIHTGS
HHHHHHHHHHHCCHHHHCCCCCCCEEEEEEEHHHHHCCCHHHHHEEEEECEEEEEEECCC
RGLGHQVASDYLMIMERAMRKYGIQVPDRELAALPFQSNEAQDYFKAMSAAANFAWANRQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCH
IITHWTRESFKQVFKKDPEALGIEIIYDVAHNIAKIEEHVVNGERYKVVVHRKGATRAFP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
PGHPDIPGDYKSIGQPVLIPGSMGTASYILLGTESGARTWYSAPHGAGRWLSRGDAIRSY
CCCCCCCCCHHHCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHCC
SPDKVMDELGRKGVVLKAATRRVISEEAPGAYKDVDRVVLVAQKVGIARPIVKMRPIGVV
CCHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC
KG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]