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The map label for this gene is rpl4lp [H]

Identifier: 218884487

GI number: 218884487

Start: 1095499

End: 1096326

Strand: Reverse

Name: rpl4lp [H]

Synonym: DKAM_1176

Alternate gene names: 218884487

Gene position: 1096326-1095499 (Counterclockwise)

Preceding gene: 218884488

Following gene: 218884486

Centisome position: 80.3

GC content: 47.83

Gene sequence:

>828_bases
GTGGTGGTTATGACTCTCGAGACAATTACTCCATTAGCCTTTAAGGAGAAAATAAAGGTCAACGTATACGGTGTCAACGG
CAACGTGGTCGGCGAGATTGAGCTACCGGAGTTATTTAATGTACCAATACGTAGAGACCTCATTAGAAGAGCCTTTCTAT
CAGCGTTTACTGCGATGCTGCAGCCGAAGGGAAGGGATCCCTTAGCTGGTAAAAGAACCACGGCTAAATACTGGGGTGTT
GGATATGGTTTAGCCAGGGTGCCAAGGCTACCCAATGGTACAGCAAGGTTTGTTGTAAGCACTAGAAAAGGACATGCAGC
GTTTCCGCCTAGACCCGATGAGAGGATACATGAAGAGGTGAATAAGAAGGAAAGAGTTATGGCTATAATCTCAGCGCTTG
CGGCCACCTCGAGACCCGAGCTAGTAAGGGAGAGGGGACATGTATTTACACCTGGCAGGCTTCCTGTGATCATAGTGGAT
GAAGCCGAGTCAAGTATTTCTAAAACTACACAGGTTAGGGAGTACCTGGAGAAGATAGGATTGTGGAGTGATGTAGAGAG
AAGCTTGGATGGCATGGGTATAAGGGCTGGTAGAGGTAAGATGAGGGGGAGGACCTACGTGGAGCCACGCAGTATATTAT
TTATTGTGTCAAGCTACAGTATACCACTTGCGAAAGCTGTAAGGAACCTTCCCGGGGTAGATATAGCGACACCTGGGAAT
CTAAGCATCCTGCATCTGGCCCCAGGTGGTGTGCCGGGTAGGTTAACGGTTATATCTATGAAGGCTCTTAACGAGCTTGC
TTCAAAATATAGGGTGAGACCGCTATGA

Upstream 100 bases:

>100_bases
GCTTATACTGCGCCACCCGATTAGACCTAACTTAAGATGGCTACCTCTCTCAGGCCCTAAGATAGCTTATTTAAGCCTTG
AGAGCAAGCAGGGCATTTAG

Downstream 100 bases:

>100_bases
GTATGGATAGACTATACAAGATCATTATTAGGCCTCTCCAAAGCGAGAAAGCTTTAACGCTCATCGATAAACAGAACACT
TTGACATTCATTGTAGATAT

Product: 50S ribosomal protein L4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MVVMTLETITPLAFKEKIKVNVYGVNGNVVGEIELPELFNVPIRRDLIRRAFLSAFTAMLQPKGRDPLAGKRTTAKYWGV
GYGLARVPRLPNGTARFVVSTRKGHAAFPPRPDERIHEEVNKKERVMAIISALAATSRPELVRERGHVFTPGRLPVIIVD
EAESSISKTTQVREYLEKIGLWSDVERSLDGMGIRAGRGKMRGRTYVEPRSILFIVSSYSIPLAKAVRNLPGVDIATPGN
LSILHLAPGGVPGRLTVISMKALNELASKYRVRPL

Sequences:

>Translated_275_residues
MVVMTLETITPLAFKEKIKVNVYGVNGNVVGEIELPELFNVPIRRDLIRRAFLSAFTAMLQPKGRDPLAGKRTTAKYWGV
GYGLARVPRLPNGTARFVVSTRKGHAAFPPRPDERIHEEVNKKERVMAIISALAATSRPELVRERGHVFTPGRLPVIIVD
EAESSISKTTQVREYLEKIGLWSDVERSLDGMGIRAGRGKMRGRTYVEPRSILFIVSSYSIPLAKAVRNLPGVDIATPGN
LSILHLAPGGVPGRLTVISMKALNELASKYRVRPL
>Mature_275_residues
MVVMTLETITPLAFKEKIKVNVYGVNGNVVGEIELPELFNVPIRRDLIRRAFLSAFTAMLQPKGRDPLAGKRTTAKYWGV
GYGLARVPRLPNGTARFVVSTRKGHAAFPPRPDERIHEEVNKKERVMAIISALAATSRPELVRERGHVFTPGRLPVIIVD
EAESSISKTTQVREYLEKIGLWSDVERSLDGMGIRAGRGKMRGRTYVEPRSILFIVSSYSIPLAKAVRNLPGVDIATPGN
LSILHLAPGGVPGRLTVISMKALNELASKYRVRPL

Specific function: Forms part of the polypeptide exit tunnel [H]

COG id: COG0088

COG function: function code J; Ribosomal protein L4

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L4P family [H]

Homologues:

Organism=Homo sapiens, GI16579885, Length=259, Percent_Identity=32.8185328185328, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17508669, Length=246, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6320215, Length=256, Percent_Identity=32.421875, Blast_Score=100, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6319505, Length=256, Percent_Identity=32.421875, Blast_Score=100, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24650747, Length=250, Percent_Identity=32.8, Blast_Score=120, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002136
- InterPro:   IPR013000
- InterPro:   IPR019970 [H]

Pfam domain/function: PF00573 Ribosomal_L4 [H]

EC number: NA

Molecular weight: Translated: 30383; Mature: 30383

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: PS00939 RIBOSOMAL_L1E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVMTLETITPLAFKEKIKVNVYGVNGNVVGEIELPELFNVPIRRDLIRRAFLSAFTAML
CEEEEECHHCCHHEECEEEEEEEEECCCEEEEEECHHHHCCCHHHHHHHHHHHHHHHHHH
QPKGRDPLAGKRTTAKYWGVGYGLARVPRLPNGTARFVVSTRKGHAAFPPRPDERIHEEV
CCCCCCCCCCCCCCHHHCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
NKKERVMAIISALAATSRPELVRERGHVFTPGRLPVIIVDEAESSISKTTQVREYLEKIG
HHHHHHHHHHHHHHHCCCHHHHHHCCCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCC
LWSDVERSLDGMGIRAGRGKMRGRTYVEPRSILFIVSSYSIPLAKAVRNLPGVDIATPGN
CHHHHHHHHCCCCEECCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHCCCCCEEECCCC
LSILHLAPGGVPGRLTVISMKALNELASKYRVRPL
EEEEEECCCCCCCEEEEEEHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MVVMTLETITPLAFKEKIKVNVYGVNGNVVGEIELPELFNVPIRRDLIRRAFLSAFTAML
CEEEEECHHCCHHEECEEEEEEEEECCCEEEEEECHHHHCCCHHHHHHHHHHHHHHHHHH
QPKGRDPLAGKRTTAKYWGVGYGLARVPRLPNGTARFVVSTRKGHAAFPPRPDERIHEEV
CCCCCCCCCCCCCCHHHCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHH
NKKERVMAIISALAATSRPELVRERGHVFTPGRLPVIIVDEAESSISKTTQVREYLEKIG
HHHHHHHHHHHHHHHCCCHHHHHHCCCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCC
LWSDVERSLDGMGIRAGRGKMRGRTYVEPRSILFIVSSYSIPLAKAVRNLPGVDIATPGN
CHHHHHHHHCCCCEECCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHCCCCCEEECCCC
LSILHLAPGGVPGRLTVISMKALNELASKYRVRPL
EEEEEECCCCCCCEEEEEEHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]