Click here to switch to the map view.

The map label for this gene is rpl15p

Identifier: 218884464

GI number: 218884464

Start: 1082662

End: 1083129

Strand: Reverse

Name: rpl15p

Synonym: DKAM_1153

Alternate gene names: 218884464

Gene position: 1083129-1082662 (Counterclockwise)

Preceding gene: 218884465

Following gene: 218884463

Centisome position: 79.34

GC content: 47.01

Gene sequence:

>468_bases
ATGGTCGTTAGAAAAGGTAAGAAATCCAGGAAACTCCAGGGTCGCACGAGAACAATGGGTTGGGGTAGGGTTGGGCAGCA
TAGGAAAAGTGGTTCGCGTGGTGGATTCGGTGCTGTAGGCTTCCATAAGCATAAATACATCTGGATAATAAAGCATGCTC
CAAACTGGTATGGTAAACACGGCTTCAGGCCTCGTAGTAGAATCCATGAGAATGTAACCATTAATGTTGGCGAGTTAGAT
GAATTAGCGTGGAGGCTGGCCTCCAACGGTAAGGCAATCATCGAGGATGGACTAATAGTGTTAAATACCGTCGAAATGGG
TTTCGACAAAGTACTAGGCTCTGGTAAGGTTACCAGGGGTTTAAAGGTTATAGCTAGGGAGATAACAGAGGAGGCTAAGA
GAAAAATCGAGGAAGCAGGGGGCAAAGTGATACTCCTCGAGGAGCTTGAAGCGGGTAGTGCAACCTAG

Upstream 100 bases:

>100_bases
ATGGATCCAGTAAAAAACCCTTCAATATGAAGGGTGAGCTTGGATACCGTGGTGAAAAAATAAATGAATTAATTGAGAGA
ATGCTATGAGGTGATAGATT

Downstream 100 bases:

>100_bases
GATTTCTATATTTTAGAACATCCAGCACTCTTAGCCTGTTGCAGGTTCTGAATTCTTTTTAAATATTTTTGGATTATGTT
TTATTCTCTTGGCGTCTTTA

Product: 50S ribosomal protein L15P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MVVRKGKKSRKLQGRTRTMGWGRVGQHRKSGSRGGFGAVGFHKHKYIWIIKHAPNWYGKHGFRPRSRIHENVTINVGELD
ELAWRLASNGKAIIEDGLIVLNTVEMGFDKVLGSGKVTRGLKVIAREITEEAKRKIEEAGGKVILLEELEAGSAT

Sequences:

>Translated_155_residues
MVVRKGKKSRKLQGRTRTMGWGRVGQHRKSGSRGGFGAVGFHKHKYIWIIKHAPNWYGKHGFRPRSRIHENVTINVGELD
ELAWRLASNGKAIIEDGLIVLNTVEMGFDKVLGSGKVTRGLKVIAREITEEAKRKIEEAGGKVILLEELEAGSAT
>Mature_155_residues
MVVRKGKKSRKLQGRTRTMGWGRVGQHRKSGSRGGFGAVGFHKHKYIWIIKHAPNWYGKHGFRPRSRIHENVTINVGELD
ELAWRLASNGKAIIEDGLIVLNTVEMGFDKVLGSGKVTRGLKVIAREITEEAKRKIEEAGGKVILLEELEAGSAT

Specific function: Binds to the 23S rRNA

COG id: COG0200

COG function: function code J; Ribosomal protein L15

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L15P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL15_DESK1 (B8D5U8)

Other databases:

- EMBL:   CP001140
- RefSeq:   YP_002428846.1
- GeneID:   7171242
- GenomeReviews:   CP001140_GR
- KEGG:   dka:DKAM_1153
- HOGENOM:   HBG727142
- OMA:   VGFHKHK
- ProtClustDB:   PRK06419
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01341_A
- InterPro:   IPR001196
- InterPro:   IPR021131

Pfam domain/function: PF00828 Ribosomal_L18e; SSF52080 Ribosomal_L18e/L15

EC number: NA

Molecular weight: Translated: 17252; Mature: 17252

Theoretical pI: Translated: 11.10; Mature: 11.10

Prosite motif: PS00475 RIBOSOMAL_L15

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVRKGKKSRKLQGRTRTMGWGRVGQHRKSGSRGGFGAVGFHKHKYIWIIKHAPNWYGKH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEEEEECCCCCCCC
GFRPRSRIHENVTINVGELDELAWRLASNGKAIIEDGLIVLNTVEMGFDKVLGSGKVTRG
CCCCHHHCCCCEEEECCCHHHHHHHHHCCCCEEEECCEEEEEEHHHHHHHHHCCCCHHHH
LKVIAREITEEAKRKIEEAGGKVILLEELEAGSAT
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MVVRKGKKSRKLQGRTRTMGWGRVGQHRKSGSRGGFGAVGFHKHKYIWIIKHAPNWYGKH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEEEEECCCCCCCC
GFRPRSRIHENVTINVGELDELAWRLASNGKAIIEDGLIVLNTVEMGFDKVLGSGKVTRG
CCCCHHHCCCCEEEECCCHHHHHHHHHCCCCEEEECCEEEEEEHHHHHHHHHCCCCHHHH
LKVIAREITEEAKRKIEEAGGKVILLEELEAGSAT
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA