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The map label for this gene is rpl39e

Identifier: 218884423

GI number: 218884423

Start: 1049296

End: 1049454

Strand: Reverse

Name: rpl39e

Synonym: DKAM_1112

Alternate gene names: 218884423

Gene position: 1049454-1049296 (Counterclockwise)

Preceding gene: 218884424

Following gene: 218884422

Centisome position: 76.87

GC content: 48.43

Gene sequence:

>159_bases
ATGGCTAGATTCAAACACGTTGCCAGGAAGCTTAGGCTTGCAGCTGCTTTGAAGTCTAATAGGGCTATACCGATCTGGGT
GTCGGCTAAGACCCGTCTAAGGGTTAGGAGGGGGTTCAGCCTCAGGAACTGGAGAAGGAGTAAGCTTAAGAATATTTAG

Upstream 100 bases:

>100_bases
CCTATAACAGATGAGTTTTTAAAGAGGCTTTTATCAGAAATATATGAGCAGACACATAGAGAACCGAGGATAGAATTCAA
GAGGAAATAGGTGTTTAAAC

Downstream 100 bases:

>100_bases
GGGTGGTTGAGCTATGAGCGAATCCGGGGGTATGGTTAAATCTGTGCATGTAATACCATTGAAGAGGGTATACTTTGGAC
GCCGCATGAACAGGGCTGAT

Product: 50S ribosomal protein L39e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 52; Mature: 51

Protein sequence:

>52_residues
MARFKHVARKLRLAAALKSNRAIPIWVSAKTRLRVRRGFSLRNWRRSKLKNI

Sequences:

>Translated_52_residues
MARFKHVARKLRLAAALKSNRAIPIWVSAKTRLRVRRGFSLRNWRRSKLKNI
>Mature_51_residues
ARFKHVARKLRLAAALKSNRAIPIWVSAKTRLRVRRGFSLRNWRRSKLKNI

Specific function: Unknown

COG id: COG2167

COG function: function code J; Ribosomal protein L39E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L39e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL39_DESK1 (B8D5Q7)

Other databases:

- EMBL:   CP001140
- RefSeq:   YP_002428805.1
- GeneID:   7171821
- GenomeReviews:   CP001140_GR
- KEGG:   dka:DKAM_1112
- HOGENOM:   HBG727906
- OMA:   RNKPLAR
- ProtClustDB:   PRK01242
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00629
- InterPro:   IPR000077
- Gene3D:   G3DSA:1.10.1620.10
- PANTHER:   PTHR19970

Pfam domain/function: PF00832 Ribosomal_L39; SSF48662 Ribosomal_L39

EC number: NA

Molecular weight: Translated: 6200; Mature: 6068

Theoretical pI: Translated: 13.51; Mature: 13.51

Prosite motif: PS00051 RIBOSOMAL_L39E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARFKHVARKLRLAAALKSNRAIPIWVSAKTRLRVRRGFSLRNWRRSKLKNI
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCHHHHHHHCCCC
>Mature Secondary Structure 
ARFKHVARKLRLAAALKSNRAIPIWVSAKTRLRVRRGFSLRNWRRSKLKNI
CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA