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The map label for this gene is 218884297

Identifier: 218884297

GI number: 218884297

Start: 935003

End: 935869

Strand: Reverse

Name: 218884297

Synonym: DKAM_0986

Alternate gene names: NA

Gene position: 935869-935003 (Counterclockwise)

Preceding gene: 218884311

Following gene: 218884296

Centisome position: 68.55

GC content: 44.29

Gene sequence:

>867_bases
ATGCCTAAATTCTGGTTTGGGCCAGCCGGTAAGCCTATAGGTCTCAAATCAATGGATATAACTGAGGCCCCAGCATTTAT
AAGGAGGATAGGGTTAAACGCTATGGAGTACGAGGCTGTTAGAGGTATTAATATAAGTGATGAAAAGGCGAGAATACTTG
GGGAAGCCTCTAGAGGCCAGGGAGTAAAGCTTAGTCTGCATGCGCCATACTATATCAACCTAGCCGGTAGAGAACAAGTA
GTAAACTCCAGTATCGAGAGGCTGACGGCCTCTGTAAGGATATCTTCAGTAATGGGTGCATATATTGTGGTATTTCACCC
AGGCTACTACAGGGACGCTCCATCTAAGCGTGGAGCTGTTGAAAAGATTATCAGGAATCTCTCAAGGGTTGTAGAGTATA
GGGATCAACAAGGCTTCAAAGATGTATGGCTTGGACCCGAGACCTCGGGTAAGATAAGCCAGGTTGGAGACCTTGAGGAG
GTAATAGAGATCTCCAGTGCTTTCAAAGGGGTTAGACCAGTCATAGACTTTGCACACTTATATGCCAGGTATATGGGTAG
ACTCGTTAGGAGTAAAGAAGATATTGTGAAAATAGTTGACGTCATAGAGAAGAAGCTTGGAAGAGAATACCTTAACCCAT
TACACACACATTTCTCGAAGATAGAGTTTAACAGAGGTGGGGAAAAGGAGCACCATGCATTAGGTGAAGAGAAATATGGC
CCCGACTTCAGGATCGTGTGTGAAGCTCTGTGTGAAGTAGGGGTGGATACGGTGGTTATTAGTGAGAGTCCTTTGTTGGA
GGAGGACTCGTTAATCATGAAGAATACTTGTATTGAGGTATGTGGTGAAAGATGCGTTGTTGAATAA

Upstream 100 bases:

>100_bases
GTAATTCTTCCCTCAATACTAGTGGCTTATCCATGGTATTCACTTCCACTAGGTTAATAAGTGATGTATAAGTGGATTAA
TTAATGAGCAGGGTGGTTTA

Downstream 100 bases:

>100_bases
GTTGCGCGATAAGCTGGCCGCTATTGTGAATACTGTAGCGAAACCCTTCATAGTTATAGGTGTACCACCAAATGTCCTGA
CAGCGTCTTCAATGATGATA

Product: Endonuclease IV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MPKFWFGPAGKPIGLKSMDITEAPAFIRRIGLNAMEYEAVRGINISDEKARILGEASRGQGVKLSLHAPYYINLAGREQV
VNSSIERLTASVRISSVMGAYIVVFHPGYYRDAPSKRGAVEKIIRNLSRVVEYRDQQGFKDVWLGPETSGKISQVGDLEE
VIEISSAFKGVRPVIDFAHLYARYMGRLVRSKEDIVKIVDVIEKKLGREYLNPLHTHFSKIEFNRGGEKEHHALGEEKYG
PDFRIVCEALCEVGVDTVVISESPLLEEDSLIMKNTCIEVCGERCVVE

Sequences:

>Translated_288_residues
MPKFWFGPAGKPIGLKSMDITEAPAFIRRIGLNAMEYEAVRGINISDEKARILGEASRGQGVKLSLHAPYYINLAGREQV
VNSSIERLTASVRISSVMGAYIVVFHPGYYRDAPSKRGAVEKIIRNLSRVVEYRDQQGFKDVWLGPETSGKISQVGDLEE
VIEISSAFKGVRPVIDFAHLYARYMGRLVRSKEDIVKIVDVIEKKLGREYLNPLHTHFSKIEFNRGGEKEHHALGEEKYG
PDFRIVCEALCEVGVDTVVISESPLLEEDSLIMKNTCIEVCGERCVVE
>Mature_287_residues
PKFWFGPAGKPIGLKSMDITEAPAFIRRIGLNAMEYEAVRGINISDEKARILGEASRGQGVKLSLHAPYYINLAGREQVV
NSSIERLTASVRISSVMGAYIVVFHPGYYRDAPSKRGAVEKIIRNLSRVVEYRDQQGFKDVWLGPETSGKISQVGDLEEV
IEISSAFKGVRPVIDFAHLYARYMGRLVRSKEDIVKIVDVIEKKLGREYLNPLHTHFSKIEFNRGGEKEHHALGEEKYGP
DFRIVCEALCEVGVDTVVISESPLLEEDSLIMKNTCIEVCGERCVVE

Specific function: Unknown

COG id: COG0648

COG function: function code L; Endonuclease IV

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001719
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 3.1.21.2

Molecular weight: Translated: 32274; Mature: 32142

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKFWFGPAGKPIGLKSMDITEAPAFIRRIGLNAMEYEAVRGINISDEKARILGEASRGQ
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCCCC
GVKLSLHAPYYINLAGREQVVNSSIERLTASVRISSVMGAYIVVFHPGYYRDAPSKRGAV
CEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCHH
EKIIRNLSRVVEYRDQQGFKDVWLGPETSGKISQVGDLEEVIEISSAFKGVRPVIDFAHL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
YARYMGRLVRSKEDIVKIVDVIEKKLGREYLNPLHTHFSKIEFNRGGEKEHHALGEEKYG
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCCCC
PDFRIVCEALCEVGVDTVVISESPLLEEDSLIMKNTCIEVCGERCVVE
CCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PKFWFGPAGKPIGLKSMDITEAPAFIRRIGLNAMEYEAVRGINISDEKARILGEASRGQ
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCCCC
GVKLSLHAPYYINLAGREQVVNSSIERLTASVRISSVMGAYIVVFHPGYYRDAPSKRGAV
CEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCHH
EKIIRNLSRVVEYRDQQGFKDVWLGPETSGKISQVGDLEEVIEISSAFKGVRPVIDFAHL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
YARYMGRLVRSKEDIVKIVDVIEKKLGREYLNPLHTHFSKIEFNRGGEKEHHALGEEKYG
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCCCC
PDFRIVCEALCEVGVDTVVISESPLLEEDSLIMKNTCIEVCGERCVVE
CCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]