| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218884288
Identifier: 218884288
GI number: 218884288
Start: 923558
End: 924445
Strand: Reverse
Name: 218884288
Synonym: DKAM_0977
Alternate gene names: NA
Gene position: 924445-923558 (Counterclockwise)
Preceding gene: 218884290
Following gene: 218884285
Centisome position: 67.71
GC content: 43.81
Gene sequence:
>888_bases ATGAGCGAAGGCATCAGGGTACTGCTAAGTAATCTATGGTTCCCTAGCAGGGATGGGGTTGTAAAAGGTGTAATATTTCT GGAAAACGGTAAAATAGGGTTTATTGGTGAAACCCCTGAACCAGAACATGAATTAAGCGAGCTACAATACGACTTCCAGG GGCATGCTATAGCCCTTCACGGCTTTAGCGCTATAGTAGACCTAGTGGAATACCCGTTTAGGAGACTAGGCATCAATGAT TTCTCAACTCTATCAAGACACGAGCTTGAGAGGCTTGCAGAGGTTGGGTTTGCAAACGCCTTAGCAAACGGGATCACTAT GCCGATAGTGTATACTGAGCACTTAAAACCCGTGGAGAAAATATCGAGGGAGCTAGGCATAAAGGTCGTGATTATTCATG AAGGGGAGGTTGTGGAGAAGAGCGGCTTATACTATTTACTCGTGAAAGAAGGCAACATATATTTCAATGATGAGAAGATA GGCGTGTTAAGCGATATAACCTGTTCACCTCAGAGGATCACTGAGAAGTGTAGGATGATGGATTTGAGAAGTACCGGTTC CACTATATCATCTCTCTCAATACTATATGAGAGCGGGGTGGACTCGGGAAGACTCTATAGAATACTTGTAGAACCCTACA GGATAACCAGGGTTGGAGAGGGGGTTATAGATGTAAACGAGATTGCGGATCTACAGGTCATCGACTTAGGGAATCCATTG AAGGCATCCATTATCAGGCATGAAGACGACTTCTGGGCAACAGTGTCCCGCTTCATGGATCCCGATATAGTTTTCGTTAA TGGGGAGTCATACTATGAAAGAGGAGAACACCTTGTTGTACCCGTTAAAAATATAACTGGTATTCTCGACAAAATCTCCA TTAAGTAA
Upstream 100 bases:
>100_bases AATTATCGTTCCACCTTAATATTTTGAATAATCATTATTGTTATTTTGGTTAATCAGTATATTAGTTGGTTTATAATAGG GATCAAGTGGGGGTTATCTC
Downstream 100 bases:
>100_bases GAATCTAGACGCTAGTCTTCTACATATATCTCAACTACGTCTCCTGTTTTAACACCGAGTGATTCACGTAGATTATGCTC TGATATAACCTCGATAATGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 295; Mature: 294
Protein sequence:
>295_residues MSEGIRVLLSNLWFPSRDGVVKGVIFLENGKIGFIGETPEPEHELSELQYDFQGHAIALHGFSAIVDLVEYPFRRLGIND FSTLSRHELERLAEVGFANALANGITMPIVYTEHLKPVEKISRELGIKVVIIHEGEVVEKSGLYYLLVKEGNIYFNDEKI GVLSDITCSPQRITEKCRMMDLRSTGSTISSLSILYESGVDSGRLYRILVEPYRITRVGEGVIDVNEIADLQVIDLGNPL KASIIRHEDDFWATVSRFMDPDIVFVNGESYYERGEHLVVPVKNITGILDKISIK
Sequences:
>Translated_295_residues MSEGIRVLLSNLWFPSRDGVVKGVIFLENGKIGFIGETPEPEHELSELQYDFQGHAIALHGFSAIVDLVEYPFRRLGIND FSTLSRHELERLAEVGFANALANGITMPIVYTEHLKPVEKISRELGIKVVIIHEGEVVEKSGLYYLLVKEGNIYFNDEKI GVLSDITCSPQRITEKCRMMDLRSTGSTISSLSILYESGVDSGRLYRILVEPYRITRVGEGVIDVNEIADLQVIDLGNPL KASIIRHEDDFWATVSRFMDPDIVFVNGESYYERGEHLVVPVKNITGILDKISIK >Mature_294_residues SEGIRVLLSNLWFPSRDGVVKGVIFLENGKIGFIGETPEPEHELSELQYDFQGHAIALHGFSAIVDLVEYPFRRLGINDF STLSRHELERLAEVGFANALANGITMPIVYTEHLKPVEKISRELGIKVVIIHEGEVVEKSGLYYLLVKEGNIYFNDEKIG VLSDITCSPQRITEKCRMMDLRSTGSTISSLSILYESGVDSGRLYRILVEPYRITRVGEGVIDVNEIADLQVIDLGNPLK ASIIRHEDDFWATVSRFMDPDIVFVNGESYYERGEHLVVPVKNITGILDKISIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33157; Mature: 33025
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEGIRVLLSNLWFPSRDGVVKGVIFLENGKIGFIGETPEPEHELSELQYDFQGHAIALH CCCHHHHHHHHCCCCCCCCEEEEEEEEECCCEEEECCCCCCHHHHHHHCCCCCCCEEEEE GFSAIVDLVEYPFRRLGINDFSTLSRHELERLAEVGFANALANGITMPIVYTEHLKPVEK HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHCCHHHH ISRELGIKVVIIHEGEVVEKSGLYYLLVKEGNIYFNDEKIGVLSDITCSPQRITEKCRMM HHHHCCEEEEEEECCCEEECCCCEEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHH DLRSTGSTISSLSILYESGVDSGRLYRILVEPYRITRVGEGVIDVNEIADLQVIDLGNPL HHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCEEEHHHCCCEEEEECCCCC KASIIRHEDDFWATVSRFMDPDIVFVNGESYYERGEHLVVPVKNITGILDKISIK EEHEEECCCHHHHHHHHHCCCCEEEECCCHHHHCCCEEEEEHHHHHHHHHHHCCC >Mature Secondary Structure SEGIRVLLSNLWFPSRDGVVKGVIFLENGKIGFIGETPEPEHELSELQYDFQGHAIALH CCHHHHHHHHCCCCCCCCEEEEEEEEECCCEEEECCCCCCHHHHHHHCCCCCCCEEEEE GFSAIVDLVEYPFRRLGINDFSTLSRHELERLAEVGFANALANGITMPIVYTEHLKPVEK HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHCCHHHH ISRELGIKVVIIHEGEVVEKSGLYYLLVKEGNIYFNDEKIGVLSDITCSPQRITEKCRMM HHHHCCEEEEEEECCCEEECCCCEEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHH DLRSTGSTISSLSILYESGVDSGRLYRILVEPYRITRVGEGVIDVNEIADLQVIDLGNPL HHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCEEEHHHCCCEEEEECCCCC KASIIRHEDDFWATVSRFMDPDIVFVNGESYYERGEHLVVPVKNITGILDKISIK EEHEEECCCHHHHHHHHHCCCCEEEECCCHHHHCCCEEEEEHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA