| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is dys2 [H]
Identifier: 218884255
GI number: 218884255
Start: 895518
End: 896531
Strand: Direct
Name: dys2 [H]
Synonym: DKAM_0944
Alternate gene names: 218884255
Gene position: 895518-896531 (Clockwise)
Preceding gene: 218884253
Following gene: 218884269
Centisome position: 65.59
GC content: 45.56
Gene sequence:
>1014_bases ATGGGTGAGGTTAAGAGCCTGAGTGTTAAGCGTAGGAGCATACATGAGCTTCTCCTTGAAATGGCTGATACAGCGTTCCA GGGTAGGAGTCTAGGCGAGGCATACCGTGTCCTTATAGATATGTTTAGCGATGAAGATAACCTCGTGTTCCTAGGGCTCG CTGGATCCATGAGTACTGCAGGTATGTGGAGGATCATTAAGTGGCTTGTAGAGGAGAGATATGTTGATGTAGTGGTCTCG ACTGGTGCTGTAATAAGCGAAGACATCTATGAAGCCATGGGCTTCAAATACTATAAGACACATCCCTGCGTCAACGATGA AGAACTCCTCAGATATAAGTATGATAGATTCTACGATACCGTTGCCAACGAGGAGGACTATAGGAAAATGGAGAAGCTAA TACAGGAATTTATTGAAACCCTACCAGCTGGAAAAACCTACAGTACAGCCGAGTTCCTTCACGAATTCGGGAAATACCTG AATGAAAAAGGAATTAACAGCATTGTAGCTGCAGCATACAGAGCCAAGGTACCCGTGTTCTCACCAGCCCTAGTTGACAG CGGTTACGGTATGGGCGCTCTCCTAGCATATAGGAGGGGACACAGGATAATCCTGGACATGGTGAGAGACTTCTACCATA TAGTAGAGATAGGTAGAAGGGCTAGTAAGCTCTCAGCAATATATATTGGGGGAGGAGTACCAAAGGACTATGTAAACCTT GTAACAGTAGCTCAAACCTTGATAGGAGAGTACGAGGAAGGCAAACATGATTATTACAAGAGCCTAGAGTATGTTGTACA GTTCACAACCGATGCACCACAGTGGGGAGGACTCAGCGGTGCAACCCTAGAGGAAGCCGTGAGCTGGGGTAAGGTGTCGC CTAAGGCTAAAAAGAAAGTAGTCTACGTTGATGCTACAATAGCTTTACCAATAATAGCTCATGCACTAGTGGATGGTGGC ATTAGGAGAAGAAGACCAGCAGACCTATCATGGTTTTTCAATAATCCACCATGA
Upstream 100 bases:
>100_bases ATGGGTCTTTCAGCGGTCTGAGCTACATGTTTTATTTTTATTTTATAATTTTGTAATTCTTGTATTGGAGGCGTGGATCA TGGGTGCCCCGTACTTTGTG
Downstream 100 bases:
>100_bases CCACGGGTCCAGTAAAAACTCAAGTCCCCGGAAGTCTTTGTTTCACTATTAGTCATTTTCAAGGGGCTAGCGCTAAGATA AGGGATATTATTGATAATGG
Product: putative deoxyhypusine synthase
Products: NA
Alternate protein names: DHS 2 [H]
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MGEVKSLSVKRRSIHELLLEMADTAFQGRSLGEAYRVLIDMFSDEDNLVFLGLAGSMSTAGMWRIIKWLVEERYVDVVVS TGAVISEDIYEAMGFKYYKTHPCVNDEELLRYKYDRFYDTVANEEDYRKMEKLIQEFIETLPAGKTYSTAEFLHEFGKYL NEKGINSIVAAAYRAKVPVFSPALVDSGYGMGALLAYRRGHRIILDMVRDFYHIVEIGRRASKLSAIYIGGGVPKDYVNL VTVAQTLIGEYEEGKHDYYKSLEYVVQFTTDAPQWGGLSGATLEEAVSWGKVSPKAKKKVVYVDATIALPIIAHALVDGG IRRRRPADLSWFFNNPP
Sequences:
>Translated_337_residues MGEVKSLSVKRRSIHELLLEMADTAFQGRSLGEAYRVLIDMFSDEDNLVFLGLAGSMSTAGMWRIIKWLVEERYVDVVVS TGAVISEDIYEAMGFKYYKTHPCVNDEELLRYKYDRFYDTVANEEDYRKMEKLIQEFIETLPAGKTYSTAEFLHEFGKYL NEKGINSIVAAAYRAKVPVFSPALVDSGYGMGALLAYRRGHRIILDMVRDFYHIVEIGRRASKLSAIYIGGGVPKDYVNL VTVAQTLIGEYEEGKHDYYKSLEYVVQFTTDAPQWGGLSGATLEEAVSWGKVSPKAKKKVVYVDATIALPIIAHALVDGG IRRRRPADLSWFFNNPP >Mature_336_residues GEVKSLSVKRRSIHELLLEMADTAFQGRSLGEAYRVLIDMFSDEDNLVFLGLAGSMSTAGMWRIIKWLVEERYVDVVVST GAVISEDIYEAMGFKYYKTHPCVNDEELLRYKYDRFYDTVANEEDYRKMEKLIQEFIETLPAGKTYSTAEFLHEFGKYLN EKGINSIVAAAYRAKVPVFSPALVDSGYGMGALLAYRRGHRIILDMVRDFYHIVEIGRRASKLSAIYIGGGVPKDYVNLV TVAQTLIGEYEEGKHDYYKSLEYVVQFTTDAPQWGGLSGATLEEAVSWGKVSPKAKKKVVYVDATIALPIIAHALVDGGI RRRRPADLSWFFNNPP
Specific function: Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine
COG id: COG1899
COG function: function code O; Deoxyhypusine synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the deoxyhypusine synthase family [H]
Homologues:
Organism=Homo sapiens, GI4503325, Length=323, Percent_Identity=25.6965944272446, Blast_Score=97, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17536927, Length=328, Percent_Identity=23.780487804878, Blast_Score=98, Evalue=6e-21, Organism=Saccharomyces cerevisiae, GI6321859, Length=350, Percent_Identity=22.2857142857143, Blast_Score=86, Evalue=7e-18, Organism=Drosophila melanogaster, GI45550569, Length=317, Percent_Identity=23.6593059936909, Blast_Score=96, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002773 - InterPro: IPR022899 [H]
Pfam domain/function: PF01916 DS [H]
EC number: =2.5.1.46 [H]
Molecular weight: Translated: 38068; Mature: 37937
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEVKSLSVKRRSIHELLLEMADTAFQGRSLGEAYRVLIDMFSDEDNLVFLGLAGSMSTA CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH GMWRIIKWLVEERYVDVVVSTGAVISEDIYEAMGFKYYKTHPCVNDEELLRYKYDRFYDT HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHH VANEEDYRKMEKLIQEFIETLPAGKTYSTAEFLHEFGKYLNEKGINSIVAAAYRAKVPVF HCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC SPALVDSGYGMGALLAYRRGHRIILDMVRDFYHIVEIGRRASKLSAIYIGGGVPKDYVNL CHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHH VTVAQTLIGEYEEGKHDYYKSLEYVVQFTTDAPQWGGLSGATLEEAVSWGKVSPKAKKKV HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHCEE VYVDATIALPIIAHALVDGGIRRRRPADLSWFFNNPP EEEEHHHHHHHHHHHHHHCCHHCCCCCCCEECCCCCC >Mature Secondary Structure GEVKSLSVKRRSIHELLLEMADTAFQGRSLGEAYRVLIDMFSDEDNLVFLGLAGSMSTA CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH GMWRIIKWLVEERYVDVVVSTGAVISEDIYEAMGFKYYKTHPCVNDEELLRYKYDRFYDT HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHH VANEEDYRKMEKLIQEFIETLPAGKTYSTAEFLHEFGKYLNEKGINSIVAAAYRAKVPVF HCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC SPALVDSGYGMGALLAYRRGHRIILDMVRDFYHIVEIGRRASKLSAIYIGGGVPKDYVNL CHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHH VTVAQTLIGEYEEGKHDYYKSLEYVVQFTTDAPQWGGLSGATLEEAVSWGKVSPKAKKKV HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHCEE VYVDATIALPIIAHALVDGGIRRRRPADLSWFFNNPP EEEEHHHHHHHHHHHHHHCCHHCCCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]