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The map label for this gene is yqiK [H]

Identifier: 218884189

GI number: 218884189

Start: 841144

End: 841878

Strand: Direct

Name: yqiK [H]

Synonym: DKAM_0878

Alternate gene names: 218884189

Gene position: 841144-841878 (Clockwise)

Preceding gene: 218884186

Following gene: 218884194

Centisome position: 61.61

GC content: 44.76

Gene sequence:

>735_bases
ATGGCTTTAAAACATGTTATAATAGGTCACAGGGGATTCCCCGCTAAATATCCTGAGAACACCATTGCCGGCTTCCTCGG
CGCTATACTCCATGGTGCTCATGGAGTAGAGCTGGATGTATGGTTAACCCAGGATGAAGTACCAGTCGTGATCCATGATA
GATCAACAAGGAGAGTAGCTGGAGTAGAACTAGATGTAAAGAACGCTACCATTGAAGAAATTAGAAGGCTGCATCTCGGA
ATGGGGCAGGGTATACCTACACTGGAAGACGTGTACAGGGCTGTTCCGGAAGGATACAGGTTATATGTTGAAGTAAAAGA
TATTGACGCCGTCCATAAGGTGTATGAGGCAACCGTCAAGCATAAGAGGGTCAGCGATGTTGTCTTCCTCAGCTTTATCA
GGGATGTACTAGTGGAGTTCAGGAAACTAGATCCCGGTTTAAGGCTTGCACTAAATGTTGCAAGCCTCGAGGAAGCCAGG
GAAGCATTAAAGCTACATAGGAATATAAAACTCTACAGTGTCAACCTCCCTGTGGTAGCCCCGTTAGTCATAGGGTTCAA
CGTGTTCAGGGAATACGTTAGGGAAGCCAGGGAACTAGGTCTCAGGGTTGTTGTATGGGATACCGAGGAGTATAAATACG
ATTATTCATTATATGGGGAAATAGCTTCGTTAATTGATGAGGCCATAGTGAATGACCCTGTTAGAATCAGAAACTACCTA
GAGATAAAACCTTAA

Upstream 100 bases:

>100_bases
GAGCCCACAAGATCCCCACCAATAGATATATTTATGATCTAAATTAATTAAGTTTACGACTGAAAGCACCCTCTTCAGGG
CGAGAGGAGGAGAAACGGGT

Downstream 100 bases:

>100_bases
TCCAGGATCCCGGTTAATCCTTTTGTGAAATAATTCTCCTAACTCTCCTTGTGGCAACTAGATCGGCTCCGCATATATCC
TTCATTATTACATCACCTAT

Product: glycerophosphoryl diester phosphodiesterase

Products: alcohol; sn-glycerol 3-phosphate

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MALKHVIIGHRGFPAKYPENTIAGFLGAILHGAHGVELDVWLTQDEVPVVIHDRSTRRVAGVELDVKNATIEEIRRLHLG
MGQGIPTLEDVYRAVPEGYRLYVEVKDIDAVHKVYEATVKHKRVSDVVFLSFIRDVLVEFRKLDPGLRLALNVASLEEAR
EALKLHRNIKLYSVNLPVVAPLVIGFNVFREYVREARELGLRVVVWDTEEYKYDYSLYGEIASLIDEAIVNDPVRIRNYL
EIKP

Sequences:

>Translated_244_residues
MALKHVIIGHRGFPAKYPENTIAGFLGAILHGAHGVELDVWLTQDEVPVVIHDRSTRRVAGVELDVKNATIEEIRRLHLG
MGQGIPTLEDVYRAVPEGYRLYVEVKDIDAVHKVYEATVKHKRVSDVVFLSFIRDVLVEFRKLDPGLRLALNVASLEEAR
EALKLHRNIKLYSVNLPVVAPLVIGFNVFREYVREARELGLRVVVWDTEEYKYDYSLYGEIASLIDEAIVNDPVRIRNYL
EIKP
>Mature_243_residues
ALKHVIIGHRGFPAKYPENTIAGFLGAILHGAHGVELDVWLTQDEVPVVIHDRSTRRVAGVELDVKNATIEEIRRLHLGM
GQGIPTLEDVYRAVPEGYRLYVEVKDIDAVHKVYEATVKHKRVSDVVFLSFIRDVLVEFRKLDPGLRLALNVASLEEARE
ALKLHRNIKLYSVNLPVVAPLVIGFNVFREYVREARELGLRVVVWDTEEYKYDYSLYGEIASLIDEAIVNDPVRIRNYLE
IKP

Specific function: Unknown

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17561436, Length=236, Percent_Identity=26.271186440678, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17542344, Length=241, Percent_Identity=25.7261410788382, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: 3.1.4.46

Molecular weight: Translated: 27833; Mature: 27701

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50007 PIPLC_X_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALKHVIIGHRGFPAKYPENTIAGFLGAILHGAHGVELDVWLTQDEVPVVIHDRSTRRVA
CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCCEEE
GVELDVKNATIEEIRRLHLGMGQGIPTLEDVYRAVPEGYRLYVEVKDIDAVHKVYEATVK
CEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHH
HKRVSDVVFLSFIRDVLVEFRKLDPGLRLALNVASLEEAREALKLHRNIKLYSVNLPVVA
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCCHHH
PLVIGFNVFREYVREARELGLRVVVWDTEEYKYDYSLYGEIASLIDEAIVNDPVRIRNYL
HHHHHHHHHHHHHHHHHHCCCEEEEECCHHHEEHHHHHHHHHHHHHHHHCCCCHHHCCEE
EIKP
ECCC
>Mature Secondary Structure 
ALKHVIIGHRGFPAKYPENTIAGFLGAILHGAHGVELDVWLTQDEVPVVIHDRSTRRVA
CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCCEEE
GVELDVKNATIEEIRRLHLGMGQGIPTLEDVYRAVPEGYRLYVEVKDIDAVHKVYEATVK
CEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHH
HKRVSDVVFLSFIRDVLVEFRKLDPGLRLALNVASLEEAREALKLHRNIKLYSVNLPVVA
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCCHHH
PLVIGFNVFREYVREARELGLRVVVWDTEEYKYDYSLYGEIASLIDEAIVNDPVRIRNYL
HHHHHHHHHHHHHHHHHHCCCEEEEECCHHHEEHHHHHHHHHHHHHHHHCCCCHHHCCEE
EIKP
ECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: glycerophosphodiester; H2O

Specific reaction: A glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 8759838 [H]