| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
Click here to switch to the map view.
The map label for this gene is 218884179
Identifier: 218884179
GI number: 218884179
Start: 833903
End: 834592
Strand: Direct
Name: 218884179
Synonym: DKAM_0868
Alternate gene names: NA
Gene position: 833903-834592 (Clockwise)
Preceding gene: 218884175
Following gene: 218884180
Centisome position: 61.08
GC content: 44.35
Gene sequence:
>690_bases ATGCCCAGGGGAAACACGAGTGTAAGCAACATTGTGAGGGAGATCGTCGAGAGTGATCCATGCCTAGTGGAAGCATTGAG TAATGGATACGTGAACTATAGCAAGCTATCGGAGAGGCTTGCCGAAGTTATCAGAGAGGAGTATGGGGTGTCATGTACAC CTAGTTCCATTAAAATGTCGCTACTGCGCAGCAGGAGCAGTGTAGCTAGGCAATCCCTTAAGTCAAGGATCTTTAGGGTT CTAGCCAGGAGCAGTATAGAGCTTAAGACAGGCCTAGCTATAGTGACATATGATTATACAGTACTCCACAAGGTGTTCAA GAGCGTTCATGAGCTAGCTGGCAGGACACGCTTCATATCTATCTCGCAGGGCATAGACAATATAACTATAATAGTGAACA CTGAGTTACTAGATGACTTAGTTGGCCTGATGGATAAGGAGCCGGTGTGGCTTGAGAGAGATGTCTCGGCAATCATAATA GTAAGCCCAATCGAGAATATTGAGACACCGGGCTTCATATCCTATATAACAACACTCCTAGCCAGGAAAGGAATCAACAT ACTCCAAATAATGTCAGCTCACAGTGACACCATCATAGTAATCGATAGAAAAGACTCTGTGGAGGCATTTAAAACACTGG AGTCAATAATATTGAAAGCCAAGGAGGATAGCAAGGAGCCCTTGAAATAA
Upstream 100 bases:
>100_bases CATGGAACAGAGATAAAAACTTTTTTACATATATGAAACATTTTAAAAAGAAGTGTTACATTTTGGAATATATTTGTTAC ATTTAGTCGTAGGTGGTGCC
Downstream 100 bases:
>100_bases ATGGGTGAATACAGTTGGCCTCGGCACTCAGCAGGGGTTCGATACCATCCCTGGATTAATCTCCAGCAGTAGAAGATGGC TTTTTGTTTCACTATGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MPRGNTSVSNIVREIVESDPCLVEALSNGYVNYSKLSERLAEVIREEYGVSCTPSSIKMSLLRSRSSVARQSLKSRIFRV LARSSIELKTGLAIVTYDYTVLHKVFKSVHELAGRTRFISISQGIDNITIIVNTELLDDLVGLMDKEPVWLERDVSAIII VSPIENIETPGFISYITTLLARKGINILQIMSAHSDTIIVIDRKDSVEAFKTLESIILKAKEDSKEPLK
Sequences:
>Translated_229_residues MPRGNTSVSNIVREIVESDPCLVEALSNGYVNYSKLSERLAEVIREEYGVSCTPSSIKMSLLRSRSSVARQSLKSRIFRV LARSSIELKTGLAIVTYDYTVLHKVFKSVHELAGRTRFISISQGIDNITIIVNTELLDDLVGLMDKEPVWLERDVSAIII VSPIENIETPGFISYITTLLARKGINILQIMSAHSDTIIVIDRKDSVEAFKTLESIILKAKEDSKEPLK >Mature_228_residues PRGNTSVSNIVREIVESDPCLVEALSNGYVNYSKLSERLAEVIREEYGVSCTPSSIKMSLLRSRSSVARQSLKSRIFRVL ARSSIELKTGLAIVTYDYTVLHKVFKSVHELAGRTRFISISQGIDNITIIVNTELLDDLVGLMDKEPVWLERDVSAIIIV SPIENIETPGFISYITTLLARKGINILQIMSAHSDTIIVIDRKDSVEAFKTLESIILKAKEDSKEPLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25568; Mature: 25437
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRGNTSVSNIVREIVESDPCLVEALSNGYVNYSKLSERLAEVIREEYGVSCTPSSIKMS CCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH LLRSRSSVARQSLKSRIFRVLARSSIELKTGLAIVTYDYTVLHKVFKSVHELAGRTRFIS HHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEEECHHHHHHHHHHHHHHCCCCEEEE ISQGIDNITIIVNTELLDDLVGLMDKEPVWLERDVSAIIIVSPIENIETPGFISYITTLL ECCCCCEEEEEEEHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHH ARKGINILQIMSAHSDTIIVIDRKDSVEAFKTLESIILKAKEDSKEPLK HHCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure PRGNTSVSNIVREIVESDPCLVEALSNGYVNYSKLSERLAEVIREEYGVSCTPSSIKMS CCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH LLRSRSSVARQSLKSRIFRVLARSSIELKTGLAIVTYDYTVLHKVFKSVHELAGRTRFIS HHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEEECHHHHHHHHHHHHHHCCCCEEEE ISQGIDNITIIVNTELLDDLVGLMDKEPVWLERDVSAIIIVSPIENIETPGFISYITTLL ECCCCCEEEEEEEHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHH ARKGINILQIMSAHSDTIIVIDRKDSVEAFKTLESIILKAKEDSKEPLK HHCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA