| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218884169
Identifier: 218884169
GI number: 218884169
Start: 823887
End: 824654
Strand: Direct
Name: 218884169
Synonym: DKAM_0858
Alternate gene names: NA
Gene position: 823887-824654 (Clockwise)
Preceding gene: 218884168
Following gene: 218884172
Centisome position: 60.35
GC content: 43.75
Gene sequence:
>768_bases ATGAGTAGTGAAGCAGGTAAAGTAATAATTAAGCTACCTAAGACAAGCATCCCCTACAAGTATGTTGAGCCAACACTAAT AGATGTGGATAAACTGGTTAACCACGAGGAACTAGTTGAGGCAAGGTTAAGGGAACTAGTTGATAAGATTCGGAGCGAGA ACGCCGTAGACATGCCAATAATAGTCACCCCTATACCCGGCACCGATAAATTCCTCATTGTTGACGGGCACCATAGATGG GCAGCTGTAAAAGCACTCGGATACAGGAAGATACCATGCGTGATCATAGACTACTTTAGCCCCGAGGTAAAGCTGAAGAC ATGGTTGCCCGGTATAATAGGCGAGGTTGAACCAGTGCTGAGCGAGGCATCAAGGAGGGGATTGAAGATCTCCATGTGCA ACTACGATCCCAACACGCTGGGAGAGATAGATGTGAAACTACTTGAAGAATCCTCCTTTATAGTACTGGGAAAGAACCTT TGCAGAGCGATAAGCGGAGGCATTGAAGGCCAGAAGATAGTTTCCCAGGTATTGAACGAGCTTAATATGAAGGGATTATT CACCCTGGTATACTATGGTGAGCTCTCAGATGCGTTGGAAGACCTTAAATCAGGGTGGCTTACATATTTATTCATACGTA AAATATTAACAAAAGAAGACGTAATGAACTATGTGAAGAAAGGACTTGTATATGCGCCTAAAACAACCAGACATATTCTG CCATTCTATCCAGCCAAGACATATACCCCCCTTAGTAAACTAGCCTAG
Upstream 100 bases:
>100_bases CTCCGCACATAGGCGCTAGCACTGTGGAGGCGCAGGAAAAAGCCGGCATAGAGGTTGCTGAGAAAATAATAGACTATTTC AGGAAGCATGGTGCCTAGTT
Downstream 100 bases:
>100_bases ATCATTGAATACCTTTTTACTTCTTTTTACTATCCTATCTTTCTTTCTTCACTAGAATTAATGTAGGTTTACGTAGAACC GGTGGAATAATGGCCAGGTA
Product: ParB domain-containing protein nuclease
Products: NA
Alternate protein names: Nuclease; Chromosome Partitioning Protein ParB Homolog; ParB Domain Protein Nuclease
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MSSEAGKVIIKLPKTSIPYKYVEPTLIDVDKLVNHEELVEARLRELVDKIRSENAVDMPIIVTPIPGTDKFLIVDGHHRW AAVKALGYRKIPCVIIDYFSPEVKLKTWLPGIIGEVEPVLSEASRRGLKISMCNYDPNTLGEIDVKLLEESSFIVLGKNL CRAISGGIEGQKIVSQVLNELNMKGLFTLVYYGELSDALEDLKSGWLTYLFIRKILTKEDVMNYVKKGLVYAPKTTRHIL PFYPAKTYTPLSKLA
Sequences:
>Translated_255_residues MSSEAGKVIIKLPKTSIPYKYVEPTLIDVDKLVNHEELVEARLRELVDKIRSENAVDMPIIVTPIPGTDKFLIVDGHHRW AAVKALGYRKIPCVIIDYFSPEVKLKTWLPGIIGEVEPVLSEASRRGLKISMCNYDPNTLGEIDVKLLEESSFIVLGKNL CRAISGGIEGQKIVSQVLNELNMKGLFTLVYYGELSDALEDLKSGWLTYLFIRKILTKEDVMNYVKKGLVYAPKTTRHIL PFYPAKTYTPLSKLA >Mature_254_residues SSEAGKVIIKLPKTSIPYKYVEPTLIDVDKLVNHEELVEARLRELVDKIRSENAVDMPIIVTPIPGTDKFLIVDGHHRWA AVKALGYRKIPCVIIDYFSPEVKLKTWLPGIIGEVEPVLSEASRRGLKISMCNYDPNTLGEIDVKLLEESSFIVLGKNLC RAISGGIEGQKIVSQVLNELNMKGLFTLVYYGELSDALEDLKSGWLTYLFIRKILTKEDVMNYVKKGLVYAPKTTRHILP FYPAKTYTPLSKLA
Specific function: Unknown
COG id: COG1475
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28708; Mature: 28577
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSEAGKVIIKLPKTSIPYKYVEPTLIDVDKLVNHEELVEARLRELVDKIRSENAVDMPI CCCCCCEEEEEECCCCCCCEECCCCEECHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCE IVTPIPGTDKFLIVDGHHRWAAVKALGYRKIPCVIIDYFSPEVKLKTWLPGIIGEVEPVL EEEECCCCCEEEEEECCCHHHHHHHCCCCCCCEEEEECCCCCEEEHHHCCHHHHHHHHHH SEASRRGLKISMCNYDPNTLGEIDVKLLEESSFIVLGKNLCRAISGGIEGQKIVSQVLNE HHHHHCCCEEEEECCCCCCCCHHHHEEECCCCEEEECHHHHHHHHCCCCHHHHHHHHHHH LNMKGLFTLVYYGELSDALEDLKSGWLTYLFIRKILTKEDVMNYVKKGLVYAPKTTRHIL HCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCC PFYPAKTYTPLSKLA CCCCCCCCCCHHHCC >Mature Secondary Structure SSEAGKVIIKLPKTSIPYKYVEPTLIDVDKLVNHEELVEARLRELVDKIRSENAVDMPI CCCCCEEEEEECCCCCCCEECCCCEECHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCE IVTPIPGTDKFLIVDGHHRWAAVKALGYRKIPCVIIDYFSPEVKLKTWLPGIIGEVEPVL EEEECCCCCEEEEEECCCHHHHHHHCCCCCCCEEEEECCCCCEEEHHHCCHHHHHHHHHH SEASRRGLKISMCNYDPNTLGEIDVKLLEESSFIVLGKNLCRAISGGIEGQKIVSQVLNE HHHHHCCCEEEEECCCCCCCCHHHHEEECCCCEEEECHHHHHHHHCCCCHHHHHHHHHHH LNMKGLFTLVYYGELSDALEDLKSGWLTYLFIRKILTKEDVMNYVKKGLVYAPKTTRHIL HCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCC PFYPAKTYTPLSKLA CCCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA