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The map label for this gene is ddpA [H]

Identifier: 218883542

GI number: 218883542

Start: 213697

End: 215316

Strand: Direct

Name: ddpA [H]

Synonym: DKAM_0231

Alternate gene names: 218883542

Gene position: 213697-215316 (Clockwise)

Preceding gene: 218883540

Following gene: 218883543

Centisome position: 15.65

GC content: 45.06

Gene sequence:

>1620_bases
GTGCGTGGGAGATTAGTCTTAGTTATAGCAATCCTGGTTATTGTCGTGGCAGCTGCCTTATTATATATAGTGCTATCACC
AAGGGAATCTATACCTAGGAGGATCGTTGTATACGCGTACAACGATAAGATATCAGGCATAGATCCAAGCATAGAGGATG
ACACAGGCTTGGTTATCCTGGGCTCAGTATACGAGCCACTGCTCTACTATAACCCCCTTAAAAACGAGTTCAAGCCTGCT
CTCGCAGTGAACTGGAGCAGTAATGAGGATGGTACTGAATGGGTTTTCCACTTAAGACAGGGTGTAAAATTCCATGATGG
AACACCATTCAATGCCACGGCTGTAAAGATAAGTGTTGAAAGAGCCCGGGATATATATAGGGAGACGGGGAGGGGTCTAG
GATATATATGGGACGCAGTTGAGGAAGTCCAGGTGCTCGATGAGTACACAGTTAAATTCAAGCTTAGCTATCCCCAGAGA
CTAGATATGATCGCGGCTGCAAGCTACGCAGCCTACATATTCTCTCCAAGCGTCCTTGAAAAGAGCTCGGCATCCTCCTA
CATGGATGAAGCCCTTGAGAAGTGGTTCAACAATGGCAATGATGGTGGCTCAGGACCATATATGATTGTATCCTATCGTC
CCGACGCCGAGGTCAGGTTAAAGAAATTCGACGAATGGTGGGGGTGGAGCATAGTTAACAACCCTGATGCACCAGATGAA
ATAATTATAAAGATACTTACGGAGCCCCAATCCCAGTATAATGGACTTATTGCCGGCGAAATAGATATCGCTTCAAGCGT
GCCCCGGGACAACATAGGGGACCTTGTAAACAGGGGGTTCAAGGTATTCAATTTAACTACGTATCACAATTACATAATGT
TCTTCAATACGAAGAGGTATCCAACAAATATAACAGAGTTCAGGAAAGCAGTACTCTACATGATAAACCTGGATGAAGCC
ATGCAACTAGCCATGAAAGGGTACGCTCTCAAGGGAAGCGGTATAATACCTCATAGTTTTCCGGGGCATATAGATAACCT
AGTATATGACTATAACATGGAGGAAGCATTAAGATACCTCAATCAATCCGGGGTCACTACCCCTGTAACCATTGAGATAC
TTTACCAGGTGGACTATGAGGAATTAAAGATCTTTGCTGAGTATCTGCAGTCAAGGCTTAGGGAGATAGGTGTAAACCTG
GTGCTTAATCCACAGCCCTGGTCTCAGTTAAAGGATATCGCTAAGGGTATTTGGGAGCACCCGGAGACAACACCGCATAT
AATTATAGCTGACTGGTGGCCCACCATACCATCCCCATACGACTACCTATACACAATGTTCCATAGTGAGTCAAAGGAGT
GGAACTTCGCTGGATACGAGGATCCAGAGTTCGATAACCTGGTTGACACGGCGTTTGAACGCGAGGGAAGTAATTACACG
GATGCGATCAACCTTTACAGGGAGGCACAACTTAAACTATATAATGAAGCAATCGCCGTAAATCTATGGGATGAGGTTAA
ACCGTTTATCTATAGTGGGAAACTGGAGATACCGGAGGAAGCCATGAACCCGCTTTACATGTATGTCGTGTTTTTCCAGT
ACGTGAAGGTGAAAGCGTAA

Upstream 100 bases:

>100_bases
CTCACCTTTAATACTACTTTCACCTGGTTAAGGTAATAAATTTTCACGAGGTTTTGTTTAAAACGCCTGGCTGATATAGG
TTTTTAAGAAGGTGTGTGAA

Downstream 100 bases:

>100_bases
ATTGCCCGTGAGCATAAACTATGTTGTGAAAAGGGTTTTTTGGTGTATCCTAATAGTTTTCGGGATAATTGTTTTTTCAT
ACTTGATCCTCATTTTCTCA

Product: extracellular solute-binding protein, family 5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MRGRLVLVIAILVIVVAAALLYIVLSPRESIPRRIVVYAYNDKISGIDPSIEDDTGLVILGSVYEPLLYYNPLKNEFKPA
LAVNWSSNEDGTEWVFHLRQGVKFHDGTPFNATAVKISVERARDIYRETGRGLGYIWDAVEEVQVLDEYTVKFKLSYPQR
LDMIAAASYAAYIFSPSVLEKSSASSYMDEALEKWFNNGNDGGSGPYMIVSYRPDAEVRLKKFDEWWGWSIVNNPDAPDE
IIIKILTEPQSQYNGLIAGEIDIASSVPRDNIGDLVNRGFKVFNLTTYHNYIMFFNTKRYPTNITEFRKAVLYMINLDEA
MQLAMKGYALKGSGIIPHSFPGHIDNLVYDYNMEEALRYLNQSGVTTPVTIEILYQVDYEELKIFAEYLQSRLREIGVNL
VLNPQPWSQLKDIAKGIWEHPETTPHIIIADWWPTIPSPYDYLYTMFHSESKEWNFAGYEDPEFDNLVDTAFEREGSNYT
DAINLYREAQLKLYNEAIAVNLWDEVKPFIYSGKLEIPEEAMNPLYMYVVFFQYVKVKA

Sequences:

>Translated_539_residues
MRGRLVLVIAILVIVVAAALLYIVLSPRESIPRRIVVYAYNDKISGIDPSIEDDTGLVILGSVYEPLLYYNPLKNEFKPA
LAVNWSSNEDGTEWVFHLRQGVKFHDGTPFNATAVKISVERARDIYRETGRGLGYIWDAVEEVQVLDEYTVKFKLSYPQR
LDMIAAASYAAYIFSPSVLEKSSASSYMDEALEKWFNNGNDGGSGPYMIVSYRPDAEVRLKKFDEWWGWSIVNNPDAPDE
IIIKILTEPQSQYNGLIAGEIDIASSVPRDNIGDLVNRGFKVFNLTTYHNYIMFFNTKRYPTNITEFRKAVLYMINLDEA
MQLAMKGYALKGSGIIPHSFPGHIDNLVYDYNMEEALRYLNQSGVTTPVTIEILYQVDYEELKIFAEYLQSRLREIGVNL
VLNPQPWSQLKDIAKGIWEHPETTPHIIIADWWPTIPSPYDYLYTMFHSESKEWNFAGYEDPEFDNLVDTAFEREGSNYT
DAINLYREAQLKLYNEAIAVNLWDEVKPFIYSGKLEIPEEAMNPLYMYVVFFQYVKVKA
>Mature_539_residues
MRGRLVLVIAILVIVVAAALLYIVLSPRESIPRRIVVYAYNDKISGIDPSIEDDTGLVILGSVYEPLLYYNPLKNEFKPA
LAVNWSSNEDGTEWVFHLRQGVKFHDGTPFNATAVKISVERARDIYRETGRGLGYIWDAVEEVQVLDEYTVKFKLSYPQR
LDMIAAASYAAYIFSPSVLEKSSASSYMDEALEKWFNNGNDGGSGPYMIVSYRPDAEVRLKKFDEWWGWSIVNNPDAPDE
IIIKILTEPQSQYNGLIAGEIDIASSVPRDNIGDLVNRGFKVFNLTTYHNYIMFFNTKRYPTNITEFRKAVLYMINLDEA
MQLAMKGYALKGSGIIPHSFPGHIDNLVYDYNMEEALRYLNQSGVTTPVTIEILYQVDYEELKIFAEYLQSRLREIGVNL
VLNPQPWSQLKDIAKGIWEHPETTPHIIIADWWPTIPSPYDYLYTMFHSESKEWNFAGYEDPEFDNLVDTAFEREGSNYT
DAINLYREAQLKLYNEAIAVNLWDEVKPFIYSGKLEIPEEAMNPLYMYVVFFQYVKVKA

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=521, Percent_Identity=26.295585412668, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI1789966, Length=528, Percent_Identity=23.6742424242424, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1787052, Length=502, Percent_Identity=22.1115537848606, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787551, Length=533, Percent_Identity=24.015009380863, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1789887, Length=436, Percent_Identity=22.7064220183486, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61953; Mature: 61953

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGRLVLVIAILVIVVAAALLYIVLSPRESIPRRIVVYAYNDKISGIDPSIEDDTGLVIL
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEE
GSVYEPLLYYNPLKNEFKPALAVNWSSNEDGTEWVFHLRQGVKFHDGTPFNATAVKISVE
CCHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEECCCCCCCCEEEEEEHH
RARDIYRETGRGLGYIWDAVEEVQVLDEYTVKFKLSYPQRLDMIAAASYAAYIFSPSVLE
HHHHHHHHHCCCCHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHEECCHHHH
KSSASSYMDEALEKWFNNGNDGGSGPYMIVSYRPDAEVRLKKFDEWWGWSIVNNPDAPDE
HCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEECCCCCCCHH
IIIKILTEPQSQYNGLIAGEIDIASSVPRDNIGDLVNRGFKVFNLTTYHNYIMFFNTKRY
HEEEEECCCHHHHCCEEEEEEECCCCCCCCCHHHHHHCCEEEEEEEEEEEEEEEEECCCC
PTNITEFRKAVLYMINLDEAMQLAMKGYALKGSGIIPHSFPGHIDNLVYDYNMEEALRYL
CCCHHHHHHHHEEEECHHHHHHHHHHCEEEECCCCCCCCCCCCHHCEEEECCHHHHHHHH
NQSGVTTPVTIEILYQVDYEELKIFAEYLQSRLREIGVNLVLNPQPWSQLKDIAKGIWEH
HHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCC
PETTPHIIIADWWPTIPSPYDYLYTMFHSESKEWNFAGYEDPEFDNLVDTAFEREGSNYT
CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCH
DAINLYREAQLKLYNEAIAVNLWDEVKPFIYSGKLEIPEEAMNPLYMYVVFFQYVKVKA
HHHHHHHHHHHHEECCEEEEEEHHHCCCEEEECCCCCCHHHHCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRGRLVLVIAILVIVVAAALLYIVLSPRESIPRRIVVYAYNDKISGIDPSIEDDTGLVIL
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEE
GSVYEPLLYYNPLKNEFKPALAVNWSSNEDGTEWVFHLRQGVKFHDGTPFNATAVKISVE
CCHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEECCCCCCCCEEEEEEHH
RARDIYRETGRGLGYIWDAVEEVQVLDEYTVKFKLSYPQRLDMIAAASYAAYIFSPSVLE
HHHHHHHHHCCCCHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHEECCHHHH
KSSASSYMDEALEKWFNNGNDGGSGPYMIVSYRPDAEVRLKKFDEWWGWSIVNNPDAPDE
HCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEECCCCCCCHH
IIIKILTEPQSQYNGLIAGEIDIASSVPRDNIGDLVNRGFKVFNLTTYHNYIMFFNTKRY
HEEEEECCCHHHHCCEEEEEEECCCCCCCCCHHHHHHCCEEEEEEEEEEEEEEEEECCCC
PTNITEFRKAVLYMINLDEAMQLAMKGYALKGSGIIPHSFPGHIDNLVYDYNMEEALRYL
CCCHHHHHHHHEEEECHHHHHHHHHHCEEEECCCCCCCCCCCCHHCEEEECCHHHHHHHH
NQSGVTTPVTIEILYQVDYEELKIFAEYLQSRLREIGVNLVLNPQPWSQLKDIAKGIWEH
HHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCC
PETTPHIIIADWWPTIPSPYDYLYTMFHSESKEWNFAGYEDPEFDNLVDTAFEREGSNYT
CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCH
DAINLYREAQLKLYNEAIAVNLWDEVKPFIYSGKLEIPEEAMNPLYMYVVFFQYVKVKA
HHHHHHHHHHHHEECCEEEEEEHHHCCCEEEECCCCCCHHHHCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]