Click here to switch to the map view.

The map label for this gene is 218883534

Identifier: 218883534

GI number: 218883534

Start: 207202

End: 207897

Strand: Direct

Name: 218883534

Synonym: DKAM_0223

Alternate gene names: NA

Gene position: 207202-207897 (Clockwise)

Preceding gene: 218883530

Following gene: 218883535

Centisome position: 15.18

GC content: 44.11

Gene sequence:

>696_bases
GTGAAGGGTATTGTAGAGCTAAGCACTAGTAGTGATCCATATCCACCCATCGAGTTATGGATGGGTTTAACCCGTAGAAG
CCTCGAGATACTTGGTAAAAACGGCTTTAAGCTCTTAATCACAACGAAATCCAATATTATTACGAGGGATATAGATATAC
TGGCGAGATACCCTTCATCAGTAATGATCACTATCACAACCCTTAACACAGAGTTGGCTAGAATACTGGAACCCGGGGCT
CCACCTCCTGAGAAAAGAATAGAGGCTGTGGAAAAGCTCAGGAGCAAGGGTATTCCGGTAGGTGTTAGAATAGACCCGGT
AATACCCTTCATCAATGATAACCCAACCGAGATAAGTAAACTAGTTAAAACCGTTAAGGAAGCCGGCGCGCTCCAGGTAA
CTGTGTCAACATATAAGGCTAAATGGGACAGCCTGCGGAGGCTTATGAACGCGTTTCCACAGGTTTCAGAAAAACTAAGG
GAGTTATACGTGGAGAACGGTGAATTCATTCATGGATACATGTATCTCTCCAACGAGGTAAGGAAGAGTATTCTAAGCCG
GGTCATCAATGAGGCTGTGAGAAGCAACCTGCCTGTTGCAACATGTAGGGAGGGATTTCCAGAGTTCTTCATCAAGGCTT
CGTCTTGTGATGGATCTGGATTAATAGTGTATCATCCATTAAATAAACTAGGGTGA

Upstream 100 bases:

>100_bases
CTGTCTTTACTGCTATGCAGCCTCGTATATTGGCAGGAGGCCTAGTACACCTAAGGAGAGCTTTATCGAGAGGCTTAAAA
AGGATTTAGAGAGGATTAGT

Downstream 100 bases:

>100_bases
TGTACTTGGATATAAATAAGCCGGTGAAATTCAACGAGTACACTGGTAAGTGCCCTGTTTGCGGAGGCTTAATGGTTTAC
GTAGACTATGTTTACAGGAT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKGIVELSTSSDPYPPIELWMGLTRRSLEILGKNGFKLLITTKSNIITRDIDILARYPSSVMITITTLNTELARILEPGA
PPPEKRIEAVEKLRSKGIPVGVRIDPVIPFINDNPTEISKLVKTVKEAGALQVTVSTYKAKWDSLRRLMNAFPQVSEKLR
ELYVENGEFIHGYMYLSNEVRKSILSRVINEAVRSNLPVATCREGFPEFFIKASSCDGSGLIVYHPLNKLG

Sequences:

>Translated_231_residues
MKGIVELSTSSDPYPPIELWMGLTRRSLEILGKNGFKLLITTKSNIITRDIDILARYPSSVMITITTLNTELARILEPGA
PPPEKRIEAVEKLRSKGIPVGVRIDPVIPFINDNPTEISKLVKTVKEAGALQVTVSTYKAKWDSLRRLMNAFPQVSEKLR
ELYVENGEFIHGYMYLSNEVRKSILSRVINEAVRSNLPVATCREGFPEFFIKASSCDGSGLIVYHPLNKLG
>Mature_231_residues
MKGIVELSTSSDPYPPIELWMGLTRRSLEILGKNGFKLLITTKSNIITRDIDILARYPSSVMITITTLNTELARILEPGA
PPPEKRIEAVEKLRSKGIPVGVRIDPVIPFINDNPTEISKLVKTVKEAGALQVTVSTYKAKWDSLRRLMNAFPQVSEKLR
ELYVENGEFIHGYMYLSNEVRKSILSRVINEAVRSNLPVATCREGFPEFFIKASSCDGSGLIVYHPLNKLG

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25829; Mature: 25829

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGIVELSTSSDPYPPIELWMGLTRRSLEILGKNGFKLLITTKSNIITRDIDILARYPSS
CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEHHHHHHHHHCCCC
VMITITTLNTELARILEPGAPPPEKRIEAVEKLRSKGIPVGVRIDPVIPFINDNPTEISK
EEEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH
LVKTVKEAGALQVTVSTYKAKWDSLRRLMNAFPQVSEKLRELYVENGEFIHGYMYLSNEV
HHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHH
RKSILSRVINEAVRSNLPVATCREGFPEFFIKASSCDGSGLIVYHPLNKLG
HHHHHHHHHHHHHHCCCCHHHHHCCCHHHEEEECCCCCCCEEEECCHHHCC
>Mature Secondary Structure
MKGIVELSTSSDPYPPIELWMGLTRRSLEILGKNGFKLLITTKSNIITRDIDILARYPSS
CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEHHHHHHHHHCCCC
VMITITTLNTELARILEPGAPPPEKRIEAVEKLRSKGIPVGVRIDPVIPFINDNPTEISK
EEEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH
LVKTVKEAGALQVTVSTYKAKWDSLRRLMNAFPQVSEKLRELYVENGEFIHGYMYLSNEV
HHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHH
RKSILSRVINEAVRSNLPVATCREGFPEFFIKASSCDGSGLIVYHPLNKLG
HHHHHHHHHHHHHHCCCCHHHHHCCCHHHEEEECCCCCCCEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]