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The map label for this gene is yfdE [H]

Identifier: 218883508

GI number: 218883508

Start: 183135

End: 184313

Strand: Direct

Name: yfdE [H]

Synonym: DKAM_0195

Alternate gene names: 218883508

Gene position: 183135-184313 (Clockwise)

Preceding gene: 218883502

Following gene: 218883509

Centisome position: 13.41

GC content: 47.16

Gene sequence:

>1179_bases
ATGTTGTTAAAGGATATCAAGGTACTTGATCTAAGCCATACACTTGCCGGGCCCTTTGCCTCCATGGTGCTAGCTGACCT
AGGAGCCGAGATAATAAAGGTTGAGGCCCCACATGGAGATGAAACCAGGAGCTGGGCCCCGTTCATCAAGGGGGAGAGCG
CTTACTATCTCTCGATAAATAGGGGGAAGAAGAGTATTGTAGTGGACTTGAAAAACCCTAAGGGGCGGGAGATAGTCTAC
AAGCTAGTAGAGAGAAGCGATGTCGTGATAGAGAACTATAGGCCCGGGGTGCCTGAGAAACTTGGGGTCGACTATGAAAG
CCTCGTAAAAATCAATCCCAAGATCATATATCTGAGTATTAAGGGGTTTAGACAGGGAAGCATATACGAGGATAAGCCAG
CATATGACCTGGTTCTACAAGGCATGTCAGGCCTCATGATGTCCACTGGCGAGGAGGGGGGACCTCCTGTGAGGGTTAGT
TTTGCGTTATTTGATGTGATCACTGGATTAATGTCCTCAATATATATTTTAAGCGCCCTCTACGCAGGTAAAAGGCCTGT
TAAAATAGAGGTTCCAATGTATGACACTGCAATATTCTCAATGTGCTACCTACCAATAATGTACCTCACGACAGGTAGAA
AGCCAAGAAGGATGGGTAGCGCCCATCCCTCCATGGTGCCTTACCAAGCCTTCAGAGATAGGGATGGGAAATGGTTCATC
GTGGCAGCCGCAAACGATAGGCTCTGGGGTTCTCTATGCCGGGCTATTGGCAGGGAAGACCTTGTAAATGATCCGCGCTT
CAGAACAAATGCCGATAGAGTGGCTAATAGAGAGGCCCTTGTTAACATGCTTCAATCAGTATTCGAGATCGATACAAGGG
ATAACTGGCTTAGGAAGCTGGAGGACGCTGGTGTTCCTGCTGCACCAGTATATGAGCTAGACGAGGTATTTCAAGACAGG
TATGTTAGCGAGCAGGGAATAGTCTATAAGATACATCATCCAGTACTAGGCGAGATCCCCCAGTTAAGCGAGCCAGGATA
TTTTAATAATGAAAAATACAACTCGAAACTACACCCACCAAGACTCGGGGAACACACAGTAGAGATACTTCAGGAGCTTG
GATACACCCCGGAGGAAATAAGCAGGCTTAAAGAGGCGGGCATCATATATTATCCATAG

Upstream 100 bases:

>100_bases
GAGATATCTACAGGTATTTAAAATTATCTATAAATCCACAGCACCCTATATTAAATATCGTTTTACATCACAAATCGAAT
TATGAACGGAGGGCGTGAAA

Downstream 100 bases:

>100_bases
GAGGTCATCATGCCCGTAGCTAAGCTCGGCATAGGATTTAAGGGTGTAGTAGCTGACCATCCCTTAGCTGTAAAGACCGG
GTTAGACGTGCTGGAGGAAG

Product: formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MLLKDIKVLDLSHTLAGPFASMVLADLGAEIIKVEAPHGDETRSWAPFIKGESAYYLSINRGKKSIVVDLKNPKGREIVY
KLVERSDVVIENYRPGVPEKLGVDYESLVKINPKIIYLSIKGFRQGSIYEDKPAYDLVLQGMSGLMMSTGEEGGPPVRVS
FALFDVITGLMSSIYILSALYAGKRPVKIEVPMYDTAIFSMCYLPIMYLTTGRKPRRMGSAHPSMVPYQAFRDRDGKWFI
VAAANDRLWGSLCRAIGREDLVNDPRFRTNADRVANREALVNMLQSVFEIDTRDNWLRKLEDAGVPAAPVYELDEVFQDR
YVSEQGIVYKIHHPVLGEIPQLSEPGYFNNEKYNSKLHPPRLGEHTVEILQELGYTPEEISRLKEAGIIYYP

Sequences:

>Translated_392_residues
MLLKDIKVLDLSHTLAGPFASMVLADLGAEIIKVEAPHGDETRSWAPFIKGESAYYLSINRGKKSIVVDLKNPKGREIVY
KLVERSDVVIENYRPGVPEKLGVDYESLVKINPKIIYLSIKGFRQGSIYEDKPAYDLVLQGMSGLMMSTGEEGGPPVRVS
FALFDVITGLMSSIYILSALYAGKRPVKIEVPMYDTAIFSMCYLPIMYLTTGRKPRRMGSAHPSMVPYQAFRDRDGKWFI
VAAANDRLWGSLCRAIGREDLVNDPRFRTNADRVANREALVNMLQSVFEIDTRDNWLRKLEDAGVPAAPVYELDEVFQDR
YVSEQGIVYKIHHPVLGEIPQLSEPGYFNNEKYNSKLHPPRLGEHTVEILQELGYTPEEISRLKEAGIIYYP
>Mature_392_residues
MLLKDIKVLDLSHTLAGPFASMVLADLGAEIIKVEAPHGDETRSWAPFIKGESAYYLSINRGKKSIVVDLKNPKGREIVY
KLVERSDVVIENYRPGVPEKLGVDYESLVKINPKIIYLSIKGFRQGSIYEDKPAYDLVLQGMSGLMMSTGEEGGPPVRVS
FALFDVITGLMSSIYILSALYAGKRPVKIEVPMYDTAIFSMCYLPIMYLTTGRKPRRMGSAHPSMVPYQAFRDRDGKWFI
VAAANDRLWGSLCRAIGREDLVNDPRFRTNADRVANREALVNMLQSVFEIDTRDNWLRKLEDAGVPAAPVYELDEVFQDR
YVSEQGIVYKIHHPVLGEIPQLSEPGYFNNEKYNSKLHPPRLGEHTVEILQELGYTPEEISRLKEAGIIYYP

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=393, Percent_Identity=38.9312977099237, Blast_Score=286, Evalue=2e-77,
Organism=Homo sapiens, GI300863124, Length=419, Percent_Identity=36.5155131264916, Blast_Score=273, Evalue=2e-73,
Organism=Homo sapiens, GI300863126, Length=390, Percent_Identity=35.8974358974359, Blast_Score=249, Evalue=3e-66,
Organism=Homo sapiens, GI13376042, Length=419, Percent_Identity=33.4128878281623, Blast_Score=229, Evalue=3e-60,
Organism=Homo sapiens, GI266456254, Length=401, Percent_Identity=28.927680798005, Blast_Score=145, Evalue=6e-35,
Organism=Homo sapiens, GI42794625, Length=401, Percent_Identity=28.927680798005, Blast_Score=145, Evalue=6e-35,
Organism=Homo sapiens, GI266458393, Length=291, Percent_Identity=30.9278350515464, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI266458397, Length=249, Percent_Identity=32.9317269076305, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=37.9310344827586, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=37.9310344827586, Blast_Score=99, Evalue=7e-21,
Organism=Escherichia coli, GI87082093, Length=315, Percent_Identity=39.6825396825397, Blast_Score=265, Evalue=3e-72,
Organism=Escherichia coli, GI1788717, Length=415, Percent_Identity=29.1566265060241, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=22.8287841191067, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=326, Percent_Identity=25.1533742331288, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=324, Percent_Identity=24.6913580246914, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=42.0253164556962, Blast_Score=311, Evalue=4e-85,
Organism=Drosophila melanogaster, GI24585488, Length=401, Percent_Identity=25.1870324189526, Blast_Score=103, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44285; Mature: 44285

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKDIKVLDLSHTLAGPFASMVLADLGAEIIKVEAPHGDETRSWAPFIKGESAYYLSIN
CCCCCEEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEECCCCEEEEEEE
RGKKSIVVDLKNPKGREIVYKLVERSDVVIENYRPGVPEKLGVDYESLVKINPKIIYLSI
CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHCCCHHHHEEECCEEEEEEE
KGFRQGSIYEDKPAYDLVLQGMSGLMMSTGEEGGPPVRVSFALFDVITGLMSSIYILSAL
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
YAGKRPVKIEVPMYDTAIFSMCYLPIMYLTTGRKPRRMGSAHPSMVPYQAFRDRDGKWFI
HCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHCCCCCEEE
VAAANDRLWGSLCRAIGREDLVNDPRFRTNADRVANREALVNMLQSVFEIDTRDNWLRKL
EEECCCHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
EDAGVPAAPVYELDEVFQDRYVSEQGIVYKIHHPVLGEIPQLSEPGYFNNEKYNSKLHPP
HHCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCCC
RLGEHTVEILQELGYTPEEISRLKEAGIIYYP
CCCHHHHHHHHHHCCCHHHHHHHHHCCEEECC
>Mature Secondary Structure
MLLKDIKVLDLSHTLAGPFASMVLADLGAEIIKVEAPHGDETRSWAPFIKGESAYYLSIN
CCCCCEEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEECCCCEEEEEEE
RGKKSIVVDLKNPKGREIVYKLVERSDVVIENYRPGVPEKLGVDYESLVKINPKIIYLSI
CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHCCCHHHHEEECCEEEEEEE
KGFRQGSIYEDKPAYDLVLQGMSGLMMSTGEEGGPPVRVSFALFDVITGLMSSIYILSAL
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
YAGKRPVKIEVPMYDTAIFSMCYLPIMYLTTGRKPRRMGSAHPSMVPYQAFRDRDGKWFI
HCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHCCCCCEEE
VAAANDRLWGSLCRAIGREDLVNDPRFRTNADRVANREALVNMLQSVFEIDTRDNWLRKL
EEECCCHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
EDAGVPAAPVYELDEVFQDRYVSEQGIVYKIHHPVLGEIPQLSEPGYFNNEKYNSKLHPP
HHCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCCC
RLGEHTVEILQELGYTPEEISRLKEAGIIYYP
CCCHHHHHHHHHHCCCHHHHHHHHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]