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The map label for this gene is yigC [C]

Identifier: 218883458

GI number: 218883458

Start: 130657

End: 131937

Strand: Reverse

Name: yigC [C]

Synonym: DKAM_0144

Alternate gene names: 218883458

Gene position: 131937-130657 (Counterclockwise)

Preceding gene: 218883459

Following gene: 218883457

Centisome position: 9.66

GC content: 45.59

Gene sequence:

>1281_bases
TTGGATCTCAAAGCAGTTGAGAAACTAGCTGGTTTCCTCAACAAGGAAATACTTGACCTAGGCACAGTGAATCCCGAGTA
CACTGTAACCAGGGCAGCATGGAGGAACAGAGATAAGGTCATCGTTTTCAGAGTTAAGGGGAGGGAATGGGTAACTGGTT
ACTCTAACCTAGTTACTAGGAGACATGACATCTATAGGTTATTCAATGTAAGGAGTGATGAGGAATTATATAGGCTTATG
GAGAAAGCATTAAACAATCCAATACACCTCGAGAAAGACGACTTCGAGAAATACTTTAAACGCGTTGACGGATTACTCGA
TACACTCCCATTCATAAAGTACTATAGGGAGGATGGGGGATACTATTTAACCAGTTCCGTCTTCATAGCATGCTATGAAA
CCTACTGTAACAGTAGTTTCCATAGAGTCATGTATCACAGTAATGAGAAAGCGACAGTTAGAATAGTTCCAAGACACCTA
TACTACATAGTTGGTAGGAGACATGAAGAGGGAGACGACGCTCCAGTCGCATTAGTCCTCGGATTAAACCCGTTTCAAGA
GCTAGCTGCCGCAATGAACCCCCCGCTTGGTGTTTTCGAGGTCGGTGTGGGGGCTGCTCTAGGTGGTGGGAGTAAGGTTG
TTGAGACACCATTGTTTAAAATACCTGTCCCGGCGGACTCCAGCATAATTGTTGAGGGCTTTATAACCCGTGATAGAGAT
AAAGAAGGGCCTTTCACAGATATATTAATGCTGGTGGATCAAGAGAGACGGGAACCCGTCTTCAAGCCTCTCGCCGTCTA
CGTATCCAGAGAGGAGTCTCCTGTGTTCCATGCCATAGTACCTGGTTCATGGGAGCATCAATTCTTAATGGGGTTCCCAC
GGGAACCCATAATATACAGTGCTGTAAAGAGAAGTGTGCCTGGTGTGAAATCCGTTAGACTGACCGAGGGAGGAAGTGGC
TGGCTTAACGCTGTAATCTCTATAAAGCAGTCTTCCCCGGGTGAAGCGAAGCTGGCTGGACTAGCTGCGGTATCAGCGCA
TCCTAGCATTAAGCATGTCTTCGTTGTGGATGAGGATATAGATGTTGATGATCCATTGATGATTGAATGGGCGATGGCAA
CAAGGACGAAAGGCTCGAGTGATATAATAGTTCTAAGAGATGTTAAAGGCAGCACATTAGATCCCAGGAGCAGTGAAGGG
GTTGGAGATAAGGTAATATTCATTGCTGTTAAGCCATGGGGAGAACCCTGGGATAAATATAGGAGGGTTGGAATACCCTA
A

Upstream 100 bases:

>100_bases
GGTCATTAGAACCAGATATCAGGATAGAATAGATGTATTAAAACTCTCTCCCATTAAACTTAGAGATGACTACACAGAGG
AGTTTATTGAGGTGTAACAC

Downstream 100 bases:

>100_bases
TGTATTTAACACCTGAGCAAGAAGCAATGCTAAAGGGGGAGTATGGCTGGAGCACTGCGAAGGCTATGGAGATCATTGTT
AAGGTAGGGGAATCCCTTGG

Product: UbiD family decarboxylase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MDLKAVEKLAGFLNKEILDLGTVNPEYTVTRAAWRNRDKVIVFRVKGREWVTGYSNLVTRRHDIYRLFNVRSDEELYRLM
EKALNNPIHLEKDDFEKYFKRVDGLLDTLPFIKYYREDGGYYLTSSVFIACYETYCNSSFHRVMYHSNEKATVRIVPRHL
YYIVGRRHEEGDDAPVALVLGLNPFQELAAAMNPPLGVFEVGVGAALGGGSKVVETPLFKIPVPADSSIIVEGFITRDRD
KEGPFTDILMLVDQERREPVFKPLAVYVSREESPVFHAIVPGSWEHQFLMGFPREPIIYSAVKRSVPGVKSVRLTEGGSG
WLNAVISIKQSSPGEAKLAGLAAVSAHPSIKHVFVVDEDIDVDDPLMIEWAMATRTKGSSDIIVLRDVKGSTLDPRSSEG
VGDKVIFIAVKPWGEPWDKYRRVGIP

Sequences:

>Translated_426_residues
MDLKAVEKLAGFLNKEILDLGTVNPEYTVTRAAWRNRDKVIVFRVKGREWVTGYSNLVTRRHDIYRLFNVRSDEELYRLM
EKALNNPIHLEKDDFEKYFKRVDGLLDTLPFIKYYREDGGYYLTSSVFIACYETYCNSSFHRVMYHSNEKATVRIVPRHL
YYIVGRRHEEGDDAPVALVLGLNPFQELAAAMNPPLGVFEVGVGAALGGGSKVVETPLFKIPVPADSSIIVEGFITRDRD
KEGPFTDILMLVDQERREPVFKPLAVYVSREESPVFHAIVPGSWEHQFLMGFPREPIIYSAVKRSVPGVKSVRLTEGGSG
WLNAVISIKQSSPGEAKLAGLAAVSAHPSIKHVFVVDEDIDVDDPLMIEWAMATRTKGSSDIIVLRDVKGSTLDPRSSEG
VGDKVIFIAVKPWGEPWDKYRRVGIP
>Mature_426_residues
MDLKAVEKLAGFLNKEILDLGTVNPEYTVTRAAWRNRDKVIVFRVKGREWVTGYSNLVTRRHDIYRLFNVRSDEELYRLM
EKALNNPIHLEKDDFEKYFKRVDGLLDTLPFIKYYREDGGYYLTSSVFIACYETYCNSSFHRVMYHSNEKATVRIVPRHL
YYIVGRRHEEGDDAPVALVLGLNPFQELAAAMNPPLGVFEVGVGAALGGGSKVVETPLFKIPVPADSSIIVEGFITRDRD
KEGPFTDILMLVDQERREPVFKPLAVYVSREESPVFHAIVPGSWEHQFLMGFPREPIIYSAVKRSVPGVKSVRLTEGGSG
WLNAVISIKQSSPGEAKLAGLAAVSAHPSIKHVFVVDEDIDVDDPLMIEWAMATRTKGSSDIIVLRDVKGSTLDPRSSEG
VGDKVIFIAVKPWGEPWDKYRRVGIP

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=333, Percent_Identity=23.1231231231231, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 47990; Mature: 47990

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKAVEKLAGFLNKEILDLGTVNPEYTVTRAAWRNRDKVIVFRVKGREWVTGYSNLVTR
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCEEEEEECCCEEECCHHHHHHH
RHDIYRLFNVRSDEELYRLMEKALNNPIHLEKDDFEKYFKRVDGLLDTLPFIKYYREDGG
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YYLTSSVFIACYETYCNSSFHRVMYHSNEKATVRIVPRHLYYIVGRRHEEGDDAPVALVL
EEEEHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCEEEEEEECCCCCCCCCCEEEEE
GLNPFQELAAAMNPPLGVFEVGVGAALGGGSKVVETPLFKIPVPADSSIIVEGFITRDRD
CCCHHHHHHHHHCCCCCEEEECCCEEECCCCCEECCCCEEECCCCCCCEEEEEEEECCCC
KEGPFTDILMLVDQERREPVFKPLAVYVSREESPVFHAIVPGSWEHQFLMGFPREPIIYS
CCCCHHHHHHHHCCHHCCCHHCCEEEEEECCCCCEEEEECCCCCCCHHEECCCCCCHHHH
AVKRSVPGVKSVRLTEGGSGWLNAVISIKQSSPGEAKLAGLAAVSAHPSIKHVFVVDEDI
HHHHCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCEEEEEEEECCC
DVDDPLMIEWAMATRTKGSSDIIVLRDVKGSTLDPRSSEGVGDKVIFIAVKPWGEPWDKY
CCCCCEEEEEEEHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHH
RRVGIP
HCCCCC
>Mature Secondary Structure
MDLKAVEKLAGFLNKEILDLGTVNPEYTVTRAAWRNRDKVIVFRVKGREWVTGYSNLVTR
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCEEEEEECCCEEECCHHHHHHH
RHDIYRLFNVRSDEELYRLMEKALNNPIHLEKDDFEKYFKRVDGLLDTLPFIKYYREDGG
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YYLTSSVFIACYETYCNSSFHRVMYHSNEKATVRIVPRHLYYIVGRRHEEGDDAPVALVL
EEEEHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCEEEEEEECCCCCCCCCCEEEEE
GLNPFQELAAAMNPPLGVFEVGVGAALGGGSKVVETPLFKIPVPADSSIIVEGFITRDRD
CCCHHHHHHHHHCCCCCEEEECCCEEECCCCCEECCCCEEECCCCCCCEEEEEEEECCCC
KEGPFTDILMLVDQERREPVFKPLAVYVSREESPVFHAIVPGSWEHQFLMGFPREPIIYS
CCCCHHHHHHHHCCHHCCCHHCCEEEEEECCCCCEEEEECCCCCCCHHEECCCCCCHHHH
AVKRSVPGVKSVRLTEGGSGWLNAVISIKQSSPGEAKLAGLAAVSAHPSIKHVFVVDEDI
HHHHCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCEEEEEEEECCC
DVDDPLMIEWAMATRTKGSSDIIVLRDVKGSTLDPRSSEGVGDKVIFIAVKPWGEPWDKY
CCCCCEEEEEEEHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHH
RRVGIP
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]