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The map label for this gene is ybiR [C]

Identifier: 218883427

GI number: 218883427

Start: 98800

End: 100248

Strand: Direct

Name: ybiR [C]

Synonym: DKAM_0113

Alternate gene names: 218883427

Gene position: 98800-100248 (Clockwise)

Preceding gene: 218883426

Following gene: 218883431

Centisome position: 7.24

GC content: 42.58

Gene sequence:

>1449_bases
ATGGTACATTTAACTGGGCCTCTCGGGAGTAAAATAACCGAGGTTGTAACAGAATATAGGGGTGCTCCAGTAAACTTAGA
TAGTGAATATGCTGACCTTTCACAAGCTATTACGTTAACAATATTCTTTACTGTGATAGTGGTGACGATCATAAAGATGG
AGTGGCGTGTAGCAGCCGCTATTTCGGGCATAGGTATACTGGTGATGAGTGCTATTGTGCCGCCTCAGGACCTGGTGGTT
AAAGCTATTGACTGGAGGCTACTATTATTTCTCATAGGCTCAATGACGTTGGCAGGTGTACTCAGGGAGACAGGGGTTTT
CAATAGGCTCGCGATTTCACTGTTGAGCAAGAGTGAGTCGTCGCTTGGATTACTTATGCTTCTCGGTATTTTCTCAGCTG
TATTAAGCATGGTTCTCGGCGAGGTGACAAGCATCATCTATGCTGTCACGGTTGTTCTAGAGCTTAAGAGGGTAATGAGG
ATAGATTTAAAGCCGTTAATAATATTCACCGTGCTCGCTACAAACACTGGCAGCATAGCACTACCGGTGGGTAACCCTAT
AGGTGTATACATCGCGTTTACAGCAAATATAGCGGTCAGCGAGTTCATAATAAAATGCCTTACGTTATCACTGCTGGAGC
TTATGGTTCTAGTACTACTTTTCAAGCTAGTGTTGAGGGATTATACAAAGGCGCTCGACCAGGAACTGAAACAATCTAAG
GAATTAATAAGCAAGTTAAGTCTTGCTAGAACAATCGATGTTTCCAGAATCGAGGTCAAGCATTTTAAGACAGGCGTCTT
TATACTAATATCCTTCGTTGCCCTGGTAGTCTCAAGCGAGCATCTTGCCAATTTAATGAGCATACTTACGGGTGTCAGCA
TTGACCCACATGCATTACTGGCTTTCATTCCGTTCTTCTCTATAGCAATGGCGATATTCATAACTGATCCGTCCAGCATA
AACAAGTTGATTGAGTCGGCTGTAGAGTGGCCGACGATGCTATTCTTCATCGCCTTATTCATTCTATCATACTCGCTTAG
CTATACTGGTGCTATAGCGAAGATAGCATACGTTATCGCGTCGGTCTCGAGTCTAAGCGGCTTTGAGGGTAACGCCATTA
CTGCAAATATATTATTAATAAGCTCTGCAGTGTTAAGTAGTGTACTAGATAATCTCTCTGTGATAGTGACATTAATGCAA
CCTGTTAAAGTACTCGTCCAGCTGGGTTTAAGTAGGGTATCGTACTTCTCCCTGCTCTATGGTGGAGTGTTTGGAGGCAA
CTATACGCCGATAGGTTCTACAGCTAACATAGTCGCTGTCTCTATGGCTGAGAGAGAAAAAATGGGGATTTCATGGAGTG
AATGGCTTAAGATAGCTCTTATATCAACAACGATACAAATAATTATTGCTGTAGTATGGAGTGACCTATGGTTACTAATA
GAATATTAG

Upstream 100 bases:

>100_bases
GTATTTGTTAGAAGAAAGTATGGTGGCAGTCTTGAAAACCATGATTAAGCTTACCATCTATATAGCTGTAATATTTTTTT
TGTCATATCTGTTTGTGAGT

Downstream 100 bases:

>100_bases
GCATCACCTGGTTTATGCTTTACCGTGTATCTTTTCCGTTTGTCCCTAGAGGGCTGTTCTGTGCTTTTTAGGGTCATTTA
GGGTCGCCTCTAGGGGCTTC

Product: Citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MVHLTGPLGSKITEVVTEYRGAPVNLDSEYADLSQAITLTIFFTVIVVTIIKMEWRVAAAISGIGILVMSAIVPPQDLVV
KAIDWRLLLFLIGSMTLAGVLRETGVFNRLAISLLSKSESSLGLLMLLGIFSAVLSMVLGEVTSIIYAVTVVLELKRVMR
IDLKPLIIFTVLATNTGSIALPVGNPIGVYIAFTANIAVSEFIIKCLTLSLLELMVLVLLFKLVLRDYTKALDQELKQSK
ELISKLSLARTIDVSRIEVKHFKTGVFILISFVALVVSSEHLANLMSILTGVSIDPHALLAFIPFFSIAMAIFITDPSSI
NKLIESAVEWPTMLFFIALFILSYSLSYTGAIAKIAYVIASVSSLSGFEGNAITANILLISSAVLSSVLDNLSVIVTLMQ
PVKVLVQLGLSRVSYFSLLYGGVFGGNYTPIGSTANIVAVSMAEREKMGISWSEWLKIALISTTIQIIIAVVWSDLWLLI
EY

Sequences:

>Translated_482_residues
MVHLTGPLGSKITEVVTEYRGAPVNLDSEYADLSQAITLTIFFTVIVVTIIKMEWRVAAAISGIGILVMSAIVPPQDLVV
KAIDWRLLLFLIGSMTLAGVLRETGVFNRLAISLLSKSESSLGLLMLLGIFSAVLSMVLGEVTSIIYAVTVVLELKRVMR
IDLKPLIIFTVLATNTGSIALPVGNPIGVYIAFTANIAVSEFIIKCLTLSLLELMVLVLLFKLVLRDYTKALDQELKQSK
ELISKLSLARTIDVSRIEVKHFKTGVFILISFVALVVSSEHLANLMSILTGVSIDPHALLAFIPFFSIAMAIFITDPSSI
NKLIESAVEWPTMLFFIALFILSYSLSYTGAIAKIAYVIASVSSLSGFEGNAITANILLISSAVLSSVLDNLSVIVTLMQ
PVKVLVQLGLSRVSYFSLLYGGVFGGNYTPIGSTANIVAVSMAEREKMGISWSEWLKIALISTTIQIIIAVVWSDLWLLI
EY
>Mature_482_residues
MVHLTGPLGSKITEVVTEYRGAPVNLDSEYADLSQAITLTIFFTVIVVTIIKMEWRVAAAISGIGILVMSAIVPPQDLVV
KAIDWRLLLFLIGSMTLAGVLRETGVFNRLAISLLSKSESSLGLLMLLGIFSAVLSMVLGEVTSIIYAVTVVLELKRVMR
IDLKPLIIFTVLATNTGSIALPVGNPIGVYIAFTANIAVSEFIIKCLTLSLLELMVLVLLFKLVLRDYTKALDQELKQSK
ELISKLSLARTIDVSRIEVKHFKTGVFILISFVALVVSSEHLANLMSILTGVSIDPHALLAFIPFFSIAMAIFITDPSSI
NKLIESAVEWPTMLFFIALFILSYSLSYTGAIAKIAYVIASVSSLSGFEGNAITANILLISSAVLSSVLDNLSVIVTLMQ
PVKVLVQLGLSRVSYFSLLYGGVFGGNYTPIGSTANIVAVSMAEREKMGISWSEWLKIALISTTIQIIIAVVWSDLWLLI
EY

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Homo sapiens, GI157266326, Length=444, Percent_Identity=26.5765765765766, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19920704, Length=187, Percent_Identity=30.4812834224599, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581759, Length=187, Percent_Identity=30.4812834224599, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574683, Length=187, Percent_Identity=30.4812834224599, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574681, Length=187, Percent_Identity=30.4812834224599, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574685, Length=187, Percent_Identity=30.4812834224599, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574678, Length=187, Percent_Identity=30.4812834224599, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000802
- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 52332; Mature: 52332

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHLTGPLGSKITEVVTEYRGAPVNLDSEYADLSQAITLTIFFTVIVVTIIKMEWRVAAA
CEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISGIGILVMSAIVPPQDLVVKAIDWRLLLFLIGSMTLAGVLRETGVFNRLAISLLSKSES
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
SLGLLMLLGIFSAVLSMVLGEVTSIIYAVTVVLELKRVMRIDLKPLIIFTVLATNTGSIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEECCCCCEE
LPVGNPIGVYIAFTANIAVSEFIIKCLTLSLLELMVLVLLFKLVLRDYTKALDQELKQSK
EECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELISKLSLARTIDVSRIEVKHFKTGVFILISFVALVVSSEHLANLMSILTGVSIDPHALL
HHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHH
AFIPFFSIAMAIFITDPSSINKLIESAVEWPTMLFFIALFILSYSLSYTGAIAKIAYVIA
HHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVSSLSGFEGNAITANILLISSAVLSSVLDNLSVIVTLMQPVKVLVQLGLSRVSYFSLLY
HHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGVFGGNYTPIGSTANIVAVSMAEREKMGISWSEWLKIALISTTIQIIIAVVWSDLWLLI
HHCCCCCCCCCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
EY
CC
>Mature Secondary Structure
MVHLTGPLGSKITEVVTEYRGAPVNLDSEYADLSQAITLTIFFTVIVVTIIKMEWRVAAA
CEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISGIGILVMSAIVPPQDLVVKAIDWRLLLFLIGSMTLAGVLRETGVFNRLAISLLSKSES
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
SLGLLMLLGIFSAVLSMVLGEVTSIIYAVTVVLELKRVMRIDLKPLIIFTVLATNTGSIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEECCCCCEE
LPVGNPIGVYIAFTANIAVSEFIIKCLTLSLLELMVLVLLFKLVLRDYTKALDQELKQSK
EECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELISKLSLARTIDVSRIEVKHFKTGVFILISFVALVVSSEHLANLMSILTGVSIDPHALL
HHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHH
AFIPFFSIAMAIFITDPSSINKLIESAVEWPTMLFFIALFILSYSLSYTGAIAKIAYVIA
HHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVSSLSGFEGNAITANILLISSAVLSSVLDNLSVIVTLMQPVKVLVQLGLSRVSYFSLLY
HHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGVFGGNYTPIGSTANIVAVSMAEREKMGISWSEWLKIALISTTIQIIIAVVWSDLWLLI
HHCCCCCCCCCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
EY
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]