Click here to switch to the map view.

The map label for this gene is yrdD [H]

Identifier: 218710994

GI number: 218710994

Start: 3258407

End: 3258976

Strand: Reverse

Name: yrdD [H]

Synonym: VS_3122

Alternate gene names: 218710994

Gene position: 3258976-3258407 (Counterclockwise)

Preceding gene: 218710995

Following gene: 218710991

Centisome position: 98.78

GC content: 45.79

Gene sequence:

>570_bases
ATGAGTAGTAAGATTGATAATCAGCTTTTTTCAGCACATGAACATGCACTAGAGCATGAACCATGTCCACAGTGTGGTGG
AGAGCTTCAGCTTCGCCATGGTAAGCACGGCCCATTTTTAGGCTGTAAGCAGTATCCGAGCTGTGATTACATCAAGCCGT
TGCATCAAAACGATGGGCACGTGGTGAAAGAGCTGGGTGTGCCGTGTCCTAAATGCCAAAACGAATTGGTATTAAGGCAA
GGCCGCTTTGGGATGTTCATTGGCTGTAGCAGCTACCCAACGTGTAATCACATCGAATCTTTGGATCAACCAAAAGAACA
ACCTGAAGAGCAGCCACTTGTTGCTTGCCCTGAGTGTGGCAGAGGCCATTTGGTTGAGCGTAAATCTCGCTATGGCAAAA
CCTTCTATGCTTGTGATAACTACCCTAAGTGTAAGTTCGCAGTAAACCAACCACCTATTATCGGTCGTTGTGAAGAGTGT
CAGTTCCCGTTGTTACTTGAGAAGAAAACAGCCAATGGAACCAAGAAGCAATGTGCTGATCGCAAGTGTCACCACATTCA
ATCTCAATAA

Upstream 100 bases:

>100_bases
GGTGCTATTCAATGTACCGGGTAATGAAAGTGCTTACACGCAAATGGAAGAGCTGTTGTACACCAAAGAGCAAGGTATCT
TGCATTAATACAGGCTTGTC

Downstream 100 bases:

>100_bases
CCTGATGTTATAGACAAAAAACGGCGCTCACTGAGCGCCATTTTTATATCCAATGAACTTTTTATATCAATAAGCCAATG
TAGGTTTACTTCATCTGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSSKIDNQLFSAHEHALEHEPCPQCGGELQLRHGKHGPFLGCKQYPSCDYIKPLHQNDGHVVKELGVPCPKCQNELVLRQ
GRFGMFIGCSSYPTCNHIESLDQPKEQPEEQPLVACPECGRGHLVERKSRYGKTFYACDNYPKCKFAVNQPPIIGRCEEC
QFPLLLEKKTANGTKKQCADRKCHHIQSQ

Sequences:

>Translated_189_residues
MSSKIDNQLFSAHEHALEHEPCPQCGGELQLRHGKHGPFLGCKQYPSCDYIKPLHQNDGHVVKELGVPCPKCQNELVLRQ
GRFGMFIGCSSYPTCNHIESLDQPKEQPEEQPLVACPECGRGHLVERKSRYGKTFYACDNYPKCKFAVNQPPIIGRCEEC
QFPLLLEKKTANGTKKQCADRKCHHIQSQ
>Mature_188_residues
SSKIDNQLFSAHEHALEHEPCPQCGGELQLRHGKHGPFLGCKQYPSCDYIKPLHQNDGHVVKELGVPCPKCQNELVLRQG
RFGMFIGCSSYPTCNHIESLDQPKEQPEEQPLVACPECGRGHLVERKSRYGKTFYACDNYPKCKFAVNQPPIIGRCEECQ
FPLLLEKKTANGTKKQCADRKCHHIQSQ

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=175, Percent_Identity=57.7142857142857, Blast_Score=207, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 21376; Mature: 21244

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
9.5 %Cys+Met (Translated Protein)
8.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKIDNQLFSAHEHALEHEPCPQCGGELQLRHGKHGPFLGCKQYPSCDYIKPLHQNDGH
CCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
VVKELGVPCPKCQNELVLRQGRFGMFIGCSSYPTCNHIESLDQPKEQPEEQPLVACPECG
EHHHHCCCCCCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHCCHHCCCCCCCEEECCCCC
RGHLVERKSRYGKTFYACDNYPKCKFAVNQPPIIGRCEECQFPLLLEKKTANGTKKQCAD
CCCCHHHHHHCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHH
RKCHHIQSQ
HHHHHCCCC
>Mature Secondary Structure 
SSKIDNQLFSAHEHALEHEPCPQCGGELQLRHGKHGPFLGCKQYPSCDYIKPLHQNDGH
CCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
VVKELGVPCPKCQNELVLRQGRFGMFIGCSSYPTCNHIESLDQPKEQPEEQPLVACPECG
EHHHHCCCCCCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHCCHHCCCCCCCEEECCCCC
RGHLVERKSRYGKTFYACDNYPKCKFAVNQPPIIGRCEECQFPLLLEKKTANGTKKQCAD
CCCCHHHHHHCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHH
RKCHHIQSQ
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]