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The map label for this gene is rimN [H]

Identifier: 218710991

GI number: 218710991

Start: 3255947

End: 3256516

Strand: Reverse

Name: rimN [H]

Synonym: VS_3119

Alternate gene names: 218710991

Gene position: 3256516-3255947 (Counterclockwise)

Preceding gene: 218710994

Following gene: 218710990

Centisome position: 98.7

GC content: 46.67

Gene sequence:

>570_bases
ATGAGGCAACCCGTGGATAACTTTCAACATACTTTGCAGGCATTACAACAAGGTGAAGTCATTGCTTACCCGACCGAAGG
CGTTTTTGGGGTCGGTTGTGATCCCGATAATCCACAAGCCATCAAGAAATTACTCGACTTAAAACAGCGACCGATCGAGA
AAGGGTTGATCTTAATTGCTGCGAGCTACGAGCAACTGTTACCTTACATTGATGAAAGCCAATTGACGGAAGCGCAGTTG
GCAACAGTGAAAGCGACATGGCCAGGTCCAGTCACTTGGATCATGCCAACCAGCAGCAAAGTTACTGACTGGGTAAGTGG
TCAATTTGATTCCATCGCGGTACGAGTGACTGATCACCCTTTGGTTCAAAGAATGTGTAATGAGTTTGGTAAGCCGTTAA
CCTCTACCAGTGCTAACCTGACCGGCGAGCCGCCTTGTATGACGACTGAAGAAGTTCAGCAGCAACTGGGCCAACATTTG
GTGGCTATTTTAGAAGGTCAAACGGGTGGTCGTGAGAAGCCAAGCGAAATTAGAGATGCAAAAACGTCGAAAATATTAAG
ACAGGGTTAA

Upstream 100 bases:

>100_bases
TGCGTCAGTCTAAGTTGTTAATTGATACATTTTATAAACAAATAGCTTTAGTCACAGTGAATGATAATTTGTACACTTAG
TGAGTTAGATAACTGAATTA

Downstream 100 bases:

>100_bases
ACCCTGCAGAGGAAGAAAGATGTCAGCAATTGATAAAGAAGCAGTAAAGCAGTTTTTACTGAGCCTACAAGATTCGATTT
GCCAGCAGCTTGAGCAAGCT

Product: Sua5/YciO/YrdC family protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MRQPVDNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPIEKGLILIAASYEQLLPYIDESQLTEAQL
ATVKATWPGPVTWIMPTSSKVTDWVSGQFDSIAVRVTDHPLVQRMCNEFGKPLTSTSANLTGEPPCMTTEEVQQQLGQHL
VAILEGQTGGREKPSEIRDAKTSKILRQG

Sequences:

>Translated_189_residues
MRQPVDNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPIEKGLILIAASYEQLLPYIDESQLTEAQL
ATVKATWPGPVTWIMPTSSKVTDWVSGQFDSIAVRVTDHPLVQRMCNEFGKPLTSTSANLTGEPPCMTTEEVQQQLGQHL
VAILEGQTGGREKPSEIRDAKTSKILRQG
>Mature_189_residues
MRQPVDNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPIEKGLILIAASYEQLLPYIDESQLTEAQL
ATVKATWPGPVTWIMPTSSKVTDWVSGQFDSIAVRVTDHPLVQRMCNEFGKPLTSTSANLTGEPPCMTTEEVQQQLGQHL
VAILEGQTGGREKPSEIRDAKTSKILRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=184, Percent_Identity=56.5217391304348, Blast_Score=227, Evalue=4e-61,
Organism=Escherichia coli, GI87081864, Length=185, Percent_Identity=24.3243243243243, Blast_Score=63, Evalue=1e-11,
Organism=Drosophila melanogaster, GI78707274, Length=190, Percent_Identity=28.4210526315789, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20823; Mature: 20823

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQPVDNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPIEKGLILIA
CCCCHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCHHCCEEEEE
ASYEQLLPYIDESQLTEAQLATVKATWPGPVTWIMPTSSKVTDWVSGQFDSIAVRVTDHP
ECHHHHCCCCCCHHHHHHHHHEEEECCCCCEEEEEECCCHHHHHHCCCCCEEEEEECCCH
LVQRMCNEFGKPLTSTSANLTGEPPCMTTEEVQQQLGQHLVAILEGQTGGREKPSEIRDA
HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
KTSKILRQG
HHHHHHHCC
>Mature Secondary Structure
MRQPVDNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPIEKGLILIA
CCCCHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCHHCCEEEEE
ASYEQLLPYIDESQLTEAQLATVKATWPGPVTWIMPTSSKVTDWVSGQFDSIAVRVTDHP
ECHHHHCCCCCCHHHHHHHHHEEEECCCCCEEEEEECCCHHHHHHCCCCCEEEEEECCCH
LVQRMCNEFGKPLTSTSANLTGEPPCMTTEEVQQQLGQHLVAILEGQTGGREKPSEIRDA
HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
KTSKILRQG
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA