| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710971
Identifier: 218710971
GI number: 218710971
Start: 3231082
End: 3231342
Strand: Direct
Name: 218710971
Synonym: VS_3085
Alternate gene names: NA
Gene position: 3231082-3231342 (Clockwise)
Preceding gene: 218710969
Following gene: 218710972
Centisome position: 97.93
GC content: 43.68
Gene sequence:
>261_bases ATGAAAAATTCTAATCTTGCTGTTACAGCTGCAATCACAAGTGTACTAGCGTTCGGCGGTGCAGTTCTTACATCAGCACC TGCTGAAGCAGCGGCAAAAGAAAAATGCTACGGTGTGGCAAAAGCTGGCCAAAATGATTGTGCAACCAAAACAAGTTCAT GTGCAGGTACAGCAAAAGAAGACAACCAATCCGATGCATTCGTAGTCGTACCTAAAGGGCTGTGTGGCAAATTATCAGGT GGTAACACTCAATCATCATAA
Upstream 100 bases:
>100_bases GTGAAATTATTTCCTGGTTCTTCCTATCCTTTTTAGTAAGCAAGTTAACAATCCATTAACCTGCGATATAAAATACTATT AAGTCCTAGAGGGAATGACT
Downstream 100 bases:
>100_bases TTGAGCTGCTTAGCATGGTGAGCTGACATTCAGCTCACCTCCACTTCTTATTAGGAGAATCGTTGTGACTCAAACTCTTC ACCCCAACACAGGGGTTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Integral Membrane Protein
Number of amino acids: Translated: 86; Mature: 86
Protein sequence:
>86_residues MKNSNLAVTAAITSVLAFGGAVLTSAPAEAAAKEKCYGVAKAGQNDCATKTSSCAGTAKEDNQSDAFVVVPKGLCGKLSG GNTQSS
Sequences:
>Translated_86_residues MKNSNLAVTAAITSVLAFGGAVLTSAPAEAAAKEKCYGVAKAGQNDCATKTSSCAGTAKEDNQSDAFVVVPKGLCGKLSG GNTQSS >Mature_86_residues MKNSNLAVTAAITSVLAFGGAVLTSAPAEAAAKEKCYGVAKAGQNDCATKTSSCAGTAKEDNQSDAFVVVPKGLCGKLSG GNTQSS
Specific function: Unknown
COG id: COG5572
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8441; Mature: 8441
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 4.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNSNLAVTAAITSVLAFGGAVLTSAPAEAAAKEKCYGVAKAGQNDCATKTSSCAGTAKE CCCCCEEHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC DNQSDAFVVVPKGLCGKLSGGNTQSS CCCCCEEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure MKNSNLAVTAAITSVLAFGGAVLTSAPAEAAAKEKCYGVAKAGQNDCATKTSSCAGTAKE CCCCCEEHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC DNQSDAFVVVPKGLCGKLSGGNTQSS CCCCCEEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA