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The map label for this gene is rsd [H]

Identifier: 218710877

GI number: 218710877

Start: 3119854

End: 3120351

Strand: Direct

Name: rsd [H]

Synonym: VS_2961

Alternate gene names: 218710877

Gene position: 3119854-3120351 (Clockwise)

Preceding gene: 218710874

Following gene: 218710888

Centisome position: 94.56

GC content: 40.76

Gene sequence:

>498_bases
ATGGTCATGCTAAATAAATTCAAACAAATACAAGAACAATGGGGTGGCTCTAATGAGGTCATCGATCATTGGCTCGAAAC
TCGACAGTCTCTAATCGTTGAGTATTGTAAGCTAGGTGCCTTGCAGCCAGCTAGCAATGGGCAATCAAACGTTGTTGAAC
TCCCTTCTCCTAAAGAAATAAGCTCATTCTGCGATCATGTTGTCGATTATATCTCAGAGGGTCATTTTAAGATCTACGAT
ATGGTCATGAAAAAATGGCAAGCAACAGGCTTTAAAACCAATGACGAGATTGATACAACTTACGCGAAGATCGTACTTAC
AACCGAGCCGCTTCTAGAGTTCAATGATAAGTACGTTAAAGTAAGTGCAGACGATGAGTTGCCTAACTTCGAAGGAGATA
TGTCAAAAGTAGGTGAACTACTCGAAGTACGTTTTGAAGTAGAAGATAATCTTATCCAGCTTATTGCAGACAGTTTAGCG
ATTCCACCAGGCGCTTAG

Upstream 100 bases:

>100_bases
GCAGAGAATATTTCAAGCTATTACTTTTAGTAGCTACCAATAAAACGGACCCTGCTTAGGCAATTACTTGATCACAAGGT
TGTGATCAGATCATGAGGAC

Downstream 100 bases:

>100_bases
TTAGCCGAATCCTTAATAAGCTTGCCTCTGTGCAAGCTTTTTGTTTTGTCTGTAAGGTTATCCAAACTACCCAGAACCTT
TCAGACAGAGCTTACTCGCT

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MVMLNKFKQIQEQWGGSNEVIDHWLETRQSLIVEYCKLGALQPASNGQSNVVELPSPKEISSFCDHVVDYISEGHFKIYD
MVMKKWQATGFKTNDEIDTTYAKIVLTTEPLLEFNDKYVKVSADDELPNFEGDMSKVGELLEVRFEVEDNLIQLIADSLA
IPPGA

Sequences:

>Translated_165_residues
MVMLNKFKQIQEQWGGSNEVIDHWLETRQSLIVEYCKLGALQPASNGQSNVVELPSPKEISSFCDHVVDYISEGHFKIYD
MVMKKWQATGFKTNDEIDTTYAKIVLTTEPLLEFNDKYVKVSADDELPNFEGDMSKVGELLEVRFEVEDNLIQLIADSLA
IPPGA
>Mature_165_residues
MVMLNKFKQIQEQWGGSNEVIDHWLETRQSLIVEYCKLGALQPASNGQSNVVELPSPKEISSFCDHVVDYISEGHFKIYD
MVMKKWQATGFKTNDEIDTTYAKIVLTTEPLLEFNDKYVKVSADDELPNFEGDMSKVGELLEVRFEVEDNLIQLIADSLA
IPPGA

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase [H]

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=164, Percent_Identity=31.0975609756098, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 18689; Mature: 18689

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMLNKFKQIQEQWGGSNEVIDHWLETRQSLIVEYCKLGALQPASNGQSNVVELPSPKEI
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHH
SSFCDHVVDYISEGHFKIYDMVMKKWQATGFKTNDEIDTTYAKIVLTTEPLLEFNDKYVK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHEEEEECCCHHHHCCCCEEE
VSADDELPNFEGDMSKVGELLEVRFEVEDNLIQLIADSLAIPPGA
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MVMLNKFKQIQEQWGGSNEVIDHWLETRQSLIVEYCKLGALQPASNGQSNVVELPSPKEI
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHH
SSFCDHVVDYISEGHFKIYDMVMKKWQATGFKTNDEIDTTYAKIVLTTEPLLEFNDKYVK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHEEEEECCCHHHHCCCCEEE
VSADDELPNFEGDMSKVGELLEVRFEVEDNLIQLIADSLAIPPGA
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA