| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710856
Identifier: 218710856
GI number: 218710856
Start: 3097736
End: 3099559
Strand: Direct
Name: 218710856
Synonym: VS_2940
Alternate gene names: NA
Gene position: 3097736-3099559 (Clockwise)
Preceding gene: 218710853
Following gene: 218710857
Centisome position: 93.89
GC content: 47.15
Gene sequence:
>1824_bases ATGCCTGAAAAATTTAATATGCAGCACCCACCCTTCGATAGCCTGTCCGATACGGAACAATTGAAGCTTCGCTCTTCATT AGACGTGGTGTATTACCGCTCTCAAGAAGTGATACTGGAAGCAGATAGGCCGAGCAGACACCTGCATATCCTGATCAAAG GAGCCGTTGAAGAGCGCGCGAGCAGTGATGGTGAGATTTACGCACATTACGCCAATGACGATATTTTTGATGTGCGCAGC CAGTTTGAACCTCACACCAAACATCAATATATCGCACTCGAAGACACCTTAAGCTACCTACTGCCTACCGATGTTTTTCT CGATCTTTATCACGCCAATGGTCAATTTGCCGCCTACTTTGATAGTAACCTATCAACACGGAAAGCTCTGATTGAGGCCG CTCAGCAGCAACAAAACCTTGCCGAGTTTATATTGACCAAAGTGGATGACTCTATTTATCACCCACCACTGATTCTTGAG CCAGGGCAACCCATCAACCAAGTCACTCAAATCCTAAAAGAGCAAGGCTTAGACTCGGCGCTGGTGCATTTAGACGACAA AGGCATAAAAGATTTTGGTTCAGGCTCCTTACCGTATGGGATCGTCACACGAACCAATTTATTGCACGCTGTAATGCTCG ATAACTTCCCACAGGACGCGCCCGTTGGCGAGATTGCAACATTTCCAGTGATGCACGTAAACCAAGGGGATTTCTTATTT AATGCCATGATTACCATGACCAGAAACCGGGTAAAAAGGTTGATGGTTTGTGACGGTCTAGATGCTGTCGGCATGGTGGA TATGACACAAATCCTCAGTGCATTCTCCACTCACTCTCACGTGCTCACTTTGCGTATTGCGCGATCCACCAGCATTGAAG AGCTCGCATTAGCCTCCAACAAACAACGTCAACTGGTCGAAAGCCTACTCAGTAACGGCATTCGCACGCGCTTCATCATG GAGCTAATTTCAGCCGTTAATGAACAGATAATAGAGAAAGCGTTTGAGTTGGTTATCCCACCCGCACTGCATAATCATTG CTGCCTCATCGTGTTGGGCTCCGAAGGCCGTGGAGAACAAATCCTCAAAACCGATCAAGACAACGCGCTAATAATTCAAG ATGGCTTGGAGTGGCACCAATGCCAGAGTGCCATGAACGACCTCACTCACACATTGCAGCAATTGGGCTATCCACTATGT CCGGGCAACGTGATGGTCAACAACCCCAAATGGGTGCATTCAGAACAAGAGTGGAAACAAACCCTCACCCGTTGGGTAAA AAAAGCCACGCCAGATACCGTGATGAATATCGCGATCATGGCGGATGCACACGCCGTTGCGGGTAATAGAGAGTTATTAA AACCCGTAAAGCAGCACCTAAGTGATTTGATGCTCGGACAAGAATTGATTCTGACTGAATTCTGCCGACCGGCTCTGAAC TTCTCAGTACCCCTCACCCTGTTTGGCAATGTTAAACAATCCAAGTCAGGGCTCGATATCAAACAAGGCGGTATTTTCCC TATCGTGCATGGTGTGAGGGCACTCTGTCTTGAGCATGGTGTCACGGTAAACAACACCTTCGAACGCATTGAACAGTTGG TCTGTAAGAAAGTGCTTGAGCAAAGTACCGCCGATAACCTTAGTGAAGCACTCAAACAGTTCTTTAAGTGGCGCTTAGCC CAAAGACTTTCTCAGCAGCACAGTAGCAACAAGATTAACGTCAAATTGATGGAGCGAGCAGACAGAGACTTACTTCGCCA TAGCTTGCATGTGGTCAAAAAATTCAAGCAATGGCTTGGCTACCACTATCAGATACGGGATTAG
Upstream 100 bases:
>100_bases CACGTTCATCGATATCTAGTCTGCATTTAGACTAAAGTCGTCTGGAGCTTCGCTGGTATTTTGTCAGACTGATTAAAGAC TCCCACTTCTTGTGATGCTT
Downstream 100 bases:
>100_bases GCGATTGAACGATGAATAGATTGGTTCGTTATTACTGGCATCATAAACTCAAAGGCTCTACTTATCAGCCTCTGTTTACT GCGCCTGCTAATCACGAATA
Product: putative signal-transduction protein
Products: NA
Alternate protein names: Signal-Transduction Protein; Nucleotidyltransferase; Signal Transduction Protein; Signal Transduction Protein With CBS Domains; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; CBS Domain Protein; Signal Protein; Inosine-5-Monophosphate Dehydrogenase; DNA Polymerase III Subunit Epsilon; CBS Signal-Transduction Protein; Cyclic-Nucleotide Signal Transduction Protein; Multidomain-Containing Protein; Nucleotidyltransferase Domain Family Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Methyl-Accepting Chemotaxis Protein A; Nucleotidyltransferases
Number of amino acids: Translated: 607; Mature: 606
Protein sequence:
>607_residues MPEKFNMQHPPFDSLSDTEQLKLRSSLDVVYYRSQEVILEADRPSRHLHILIKGAVEERASSDGEIYAHYANDDIFDVRS QFEPHTKHQYIALEDTLSYLLPTDVFLDLYHANGQFAAYFDSNLSTRKALIEAAQQQQNLAEFILTKVDDSIYHPPLILE PGQPINQVTQILKEQGLDSALVHLDDKGIKDFGSGSLPYGIVTRTNLLHAVMLDNFPQDAPVGEIATFPVMHVNQGDFLF NAMITMTRNRVKRLMVCDGLDAVGMVDMTQILSAFSTHSHVLTLRIARSTSIEELALASNKQRQLVESLLSNGIRTRFIM ELISAVNEQIIEKAFELVIPPALHNHCCLIVLGSEGRGEQILKTDQDNALIIQDGLEWHQCQSAMNDLTHTLQQLGYPLC PGNVMVNNPKWVHSEQEWKQTLTRWVKKATPDTVMNIAIMADAHAVAGNRELLKPVKQHLSDLMLGQELILTEFCRPALN FSVPLTLFGNVKQSKSGLDIKQGGIFPIVHGVRALCLEHGVTVNNTFERIEQLVCKKVLEQSTADNLSEALKQFFKWRLA QRLSQQHSSNKINVKLMERADRDLLRHSLHVVKKFKQWLGYHYQIRD
Sequences:
>Translated_607_residues MPEKFNMQHPPFDSLSDTEQLKLRSSLDVVYYRSQEVILEADRPSRHLHILIKGAVEERASSDGEIYAHYANDDIFDVRS QFEPHTKHQYIALEDTLSYLLPTDVFLDLYHANGQFAAYFDSNLSTRKALIEAAQQQQNLAEFILTKVDDSIYHPPLILE PGQPINQVTQILKEQGLDSALVHLDDKGIKDFGSGSLPYGIVTRTNLLHAVMLDNFPQDAPVGEIATFPVMHVNQGDFLF NAMITMTRNRVKRLMVCDGLDAVGMVDMTQILSAFSTHSHVLTLRIARSTSIEELALASNKQRQLVESLLSNGIRTRFIM ELISAVNEQIIEKAFELVIPPALHNHCCLIVLGSEGRGEQILKTDQDNALIIQDGLEWHQCQSAMNDLTHTLQQLGYPLC PGNVMVNNPKWVHSEQEWKQTLTRWVKKATPDTVMNIAIMADAHAVAGNRELLKPVKQHLSDLMLGQELILTEFCRPALN FSVPLTLFGNVKQSKSGLDIKQGGIFPIVHGVRALCLEHGVTVNNTFERIEQLVCKKVLEQSTADNLSEALKQFFKWRLA QRLSQQHSSNKINVKLMERADRDLLRHSLHVVKKFKQWLGYHYQIRD >Mature_606_residues PEKFNMQHPPFDSLSDTEQLKLRSSLDVVYYRSQEVILEADRPSRHLHILIKGAVEERASSDGEIYAHYANDDIFDVRSQ FEPHTKHQYIALEDTLSYLLPTDVFLDLYHANGQFAAYFDSNLSTRKALIEAAQQQQNLAEFILTKVDDSIYHPPLILEP GQPINQVTQILKEQGLDSALVHLDDKGIKDFGSGSLPYGIVTRTNLLHAVMLDNFPQDAPVGEIATFPVMHVNQGDFLFN AMITMTRNRVKRLMVCDGLDAVGMVDMTQILSAFSTHSHVLTLRIARSTSIEELALASNKQRQLVESLLSNGIRTRFIME LISAVNEQIIEKAFELVIPPALHNHCCLIVLGSEGRGEQILKTDQDNALIIQDGLEWHQCQSAMNDLTHTLQQLGYPLCP GNVMVNNPKWVHSEQEWKQTLTRWVKKATPDTVMNIAIMADAHAVAGNRELLKPVKQHLSDLMLGQELILTEFCRPALNF SVPLTLFGNVKQSKSGLDIKQGGIFPIVHGVRALCLEHGVTVNNTFERIEQLVCKKVLEQSTADNLSEALKQFFKWRLAQ RLSQQHSSNKINVKLMERADRDLLRHSLHVVKKFKQWLGYHYQIRD
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68772; Mature: 68641
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEKFNMQHPPFDSLSDTEQLKLRSSLDVVYYRSQEVILEADRPSRHLHILIKGAVEERA CCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEHHHHHC SSDGEIYAHYANDDIFDVRSQFEPHTKHQYIALEDTLSYLLPTDVFLDLYHANGQFAAYF CCCCCEEEEECCCCHHHHHHHCCCCCCCEEEEHHHHHHHHCCHHHHHEEEECCCCEEEEE DSNLSTRKALIEAAQQQQNLAEFILTKVDDSIYHPPLILEPGQPINQVTQILKEQGLDSA CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCE LVHLDDKGIKDFGSGSLPYGIVTRTNLLHAVMLDNFPQDAPVGEIATFPVMHVNQGDFLF EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHCCCEEECCCCCHHH NAMITMTRNRVKRLMVCDGLDAVGMVDMTQILSAFSTHSHVLTLRIARSTSIEELALASN HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHCC KQRQLVESLLSNGIRTRFIMELISAVNEQIIEKAFELVIPPALHNHCCLIVLGSEGRGEQ HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC ILKTDQDNALIIQDGLEWHQCQSAMNDLTHTLQQLGYPLCPGNVMVNNPKWVHSEQEWKQ CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHH TLTRWVKKATPDTVMNIAIMADAHAVAGNRELLKPVKQHLSDLMLGQELILTEFCRPALN HHHHHHHHCCCHHHHEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC FSVPLTLFGNVKQSKSGLDIKQGGIFPIVHGVRALCLEHGVTVNNTFERIEQLVCKKVLE CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH QSTADNLSEALKQFFKWRLAQRLSQQHSSNKINVKLMERADRDLLRHSLHVVKKFKQWLG HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC YHYQIRD CCEEECC >Mature Secondary Structure PEKFNMQHPPFDSLSDTEQLKLRSSLDVVYYRSQEVILEADRPSRHLHILIKGAVEERA CCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCEEEEECCCCCCEEEEEEEEHHHHHC SSDGEIYAHYANDDIFDVRSQFEPHTKHQYIALEDTLSYLLPTDVFLDLYHANGQFAAYF CCCCCEEEEECCCCHHHHHHHCCCCCCCEEEEHHHHHHHHCCHHHHHEEEECCCCEEEEE DSNLSTRKALIEAAQQQQNLAEFILTKVDDSIYHPPLILEPGQPINQVTQILKEQGLDSA CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCE LVHLDDKGIKDFGSGSLPYGIVTRTNLLHAVMLDNFPQDAPVGEIATFPVMHVNQGDFLF EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHCCCEEECCCCCHHH NAMITMTRNRVKRLMVCDGLDAVGMVDMTQILSAFSTHSHVLTLRIARSTSIEELALASN HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHCC KQRQLVESLLSNGIRTRFIMELISAVNEQIIEKAFELVIPPALHNHCCLIVLGSEGRGEQ HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC ILKTDQDNALIIQDGLEWHQCQSAMNDLTHTLQQLGYPLCPGNVMVNNPKWVHSEQEWKQ CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHH TLTRWVKKATPDTVMNIAIMADAHAVAGNRELLKPVKQHLSDLMLGQELILTEFCRPALN HHHHHHHHCCCHHHHEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC FSVPLTLFGNVKQSKSGLDIKQGGIFPIVHGVRALCLEHGVTVNNTFERIEQLVCKKVLE CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH QSTADNLSEALKQFFKWRLAQRLSQQHSSNKINVKLMERADRDLLRHSLHVVKKFKQWLG HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC YHYQIRD CCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA