| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is aroK [H]
Identifier: 218710789
GI number: 218710789
Start: 3020180
End: 3020698
Strand: Reverse
Name: aroK [H]
Synonym: VS_2872
Alternate gene names: 218710789
Gene position: 3020698-3020180 (Counterclockwise)
Preceding gene: 218710790
Following gene: 218710788
Centisome position: 91.56
GC content: 46.63
Gene sequence:
>519_bases ATGGCTGAGAAACGCAATATTTTTCTTGTTGGCCCAATGGGCGCCGGCAAAAGTACAATTGGTAGACACCTAGCTTCCCA ACTTCATATGGAGTTTCTAGACTCTGACACTGTGATCGAAGAGCGCACTGGCGCAGACATCGCATGGGTTTTTGATGTTG AGGGCGAAGATGGTTTCCGTAAGCGCGAAGAATCTGTAATCAACGATCTGACAGAAGAACAAGGTATTGTTCTTGCGACA GGTGGTGGTTCAGTGCTGAGCAAAGAAAACCGTAACCGTCTATCTGCACGAGGCATTGTTGTATACCTAGAGACAACAAT TGAAAAGCAACTTGCTCGCACTAACCGCGACAAGAAACGCCCTCTACTTCAAACAGACAACCCGCGTGATGTGCTAGAAG ATCTAGCTGTATCTCGCAACGCACTATACGAAGAAGTGGCGGACTACACAGTTCGTACTGACGACCAAAGTGCAAAAGTG GTAGCCAACCAGATCGTAAAAATGCTAGAAGAACGTTAA
Upstream 100 bases:
>100_bases TGTGAGGAATCGGTGCCACGGGCCTTTTAATTTCAGTACTTGTACTGACCTACCTTGTGGCGATGTCATTGAATTAACGT TGTAAATTACTGCTAAAAAC
Downstream 100 bases:
>100_bases GTTCATTTTTCGGAGAGCAAACCCATGGAACGGATTACGGTCAATCTAGCTGAGCGTAGCTACCCTATCTCTATTGGCGC CGGGTTATTTGAAGACCCGG
Product: shikimate kinase I
Products: NA
Alternate protein names: SK [H]
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MAEKRNIFLVGPMGAGKSTIGRHLASQLHMEFLDSDTVIEERTGADIAWVFDVEGEDGFRKREESVINDLTEEQGIVLAT GGGSVLSKENRNRLSARGIVVYLETTIEKQLARTNRDKKRPLLQTDNPRDVLEDLAVSRNALYEEVADYTVRTDDQSAKV VANQIVKMLEER
Sequences:
>Translated_172_residues MAEKRNIFLVGPMGAGKSTIGRHLASQLHMEFLDSDTVIEERTGADIAWVFDVEGEDGFRKREESVINDLTEEQGIVLAT GGGSVLSKENRNRLSARGIVVYLETTIEKQLARTNRDKKRPLLQTDNPRDVLEDLAVSRNALYEEVADYTVRTDDQSAKV VANQIVKMLEER >Mature_171_residues AEKRNIFLVGPMGAGKSTIGRHLASQLHMEFLDSDTVIEERTGADIAWVFDVEGEDGFRKREESVINDLTEEQGIVLATG GGSVLSKENRNRLSARGIVVYLETTIEKQLARTNRDKKRPLLQTDNPRDVLEDLAVSRNALYEEVADYTVRTDDQSAKVV ANQIVKMLEER
Specific function: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate [H]
COG id: COG0703
COG function: function code E; Shikimate kinase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate kinase family [H]
Homologues:
Organism=Escherichia coli, GI87082255, Length=171, Percent_Identity=79.5321637426901, Blast_Score=276, Evalue=8e-76, Organism=Escherichia coli, GI1786587, Length=159, Percent_Identity=31.4465408805031, Blast_Score=88, Evalue=4e-19,
Paralogues:
None
Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000623 - InterPro: IPR023000 [H]
Pfam domain/function: PF01202 SKI [H]
EC number: =2.7.1.71 [H]
Molecular weight: Translated: 19291; Mature: 19160
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: PS01128 SHIKIMATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEKRNIFLVGPMGAGKSTIGRHLASQLHMEFLDSDTVIEERTGADIAWVFDVEGEDGFR CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEEEECCCCCHH KREESVINDLTEEQGIVLATGGGSVLSKENRNRLSARGIVVYLETTIEKQLARTNRDKKR HHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHCC PLLQTDNPRDVLEDLAVSRNALYEEVADYTVRTDDQSAKVVANQIVKMLEER CCCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure AEKRNIFLVGPMGAGKSTIGRHLASQLHMEFLDSDTVIEERTGADIAWVFDVEGEDGFR CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEEEECCCCCHH KREESVINDLTEEQGIVLATGGGSVLSKENRNRLSARGIVVYLETTIEKQLARTNRDKKR HHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHCC PLLQTDNPRDVLEDLAVSRNALYEEVADYTVRTDDQSAKVVANQIVKMLEER CCCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA