| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710781
Identifier: 218710781
GI number: 218710781
Start: 3010711
End: 3013314
Strand: Reverse
Name: 218710781
Synonym: VS_2864
Alternate gene names: NA
Gene position: 3013314-3010711 (Counterclockwise)
Preceding gene: 218710783
Following gene: 218710779
Centisome position: 91.33
GC content: 47.2
Gene sequence:
>2604_bases GTGAAACGGATGGCTCTTTTACATAAACCTTCATTGCTAGCAGTGGCAATTGGTAGCTTGTTAACCACAAGCGCACATGC TGATTTGTTTATTTCACAATATGTGGAAGGCGGCAGCTATAACAAAGCGGTTGAGATTGCCAATAACGGCGATAGCAGCA TGAATTTAGATGGTTACTCGTTGGCGAAGTCTGCGAATGGTAATGGATCATGGGGCGCGACTTTATCTTTGAATGGCCAC GTTTTAGCGCCCGGTGAAGTACTCGTGGTTGCGCACACCAGCGCAAGTGACGAAATTAAAGCGGCGGCTGATATTCTTAA CGCGTCGATTGCTAATCACAATGGTGACGATCCGCTGGCTATCTTGAATTCAGATGGTTCGGTGCACGATGTTGTCGGTT TGATGGGCGATGTGGACTGGGGTAAAGATGTTACTTTGGTTCGTGCTAAACAAACACCTTCTGCGACGTTTGATGCTTCG CAATGGGTATCGTTACCTAAGGACAGTATTGAAGGGCTAGGTTCACTAGACAATGTAGAGTTGCCTGACGCGTTTGCCTG TACACAAGATGGCTCTGCTCCTGTATTCACGACTATTCAAGAGATCCAAGGTGAAGGCGCAACATCACCGTTCATTGATG GCTATCCATACATCACTGACGATGAATACTTCGTCAAAGGTGTGGTAAGTGCAGTCACTACTGGCATAACCAAAGGTTTC TACCTGCAAGCACTTGAGGATGACTTCAATTCAAGCACTTCTGAAGGTCTATTTATCCACACCAATCAATCGAGTTCAGA ACTGGCTGCGGGCGATGTAGTGTGTGTGAAAGGTAAGGTTCAAGAGTATTACAGTCATACTCAGCTTAAAGTTGAAAACA ACCAATGGCTTAAGCAGGGCGAGCAACAAGCGCCTGAAGCGACAGTAATTGAAGCCTTAGACAGTGACGAGAACTTCGCT GCAACGCTTGAACGCCATGAAGGCATGTTGGTGAAAACAACCGAAGCGCTTGATATGCGTGTAACGCGTACCTTTGGTTA TGACTACGCAGGTCGTCGTAACAACATGGTACTGGCCCATGAGCGTATTAACATGCAGCCGAATCAGTTATCTGCAGCTG GCTCTGAAGATGCGAAACAGCAAACTAAAGATAACGCAGACCGTCGTCTTTTTGTTGAAACCGATCAAAAAGCCGGTGAC GGACAAGTTCCTTTCTATCCAGACTTTGGCCGTACCGATATTGACCAAGATGGTTCAACAGAAGACTACATCCGTATTGA TGACACCATTGTTGGCCTAGAAGGCGTGCTGACTTACAGCTACGGCGAGTATCGCTTAGTGACAACCAACCAGATCTCGG CTGAGAACTTTGTACGTAATGACCCACGTACTGACAAGCCTGATATGGATGAAGGTGATCTACGTATCGCGACCTTCAAC GTATTGAACTACTTTAACTCTCCATTTGGCGGTGACGCGAACCAACACGGCAACAACCGTGGCGCGAACACCATCACTGA GTTTGAGATGCAGCAAGAGAAGATTGTGAACGCGATTCTTCGTCTAGATGCCGACATCATTGGTTTGATGGAAATTGAGA ACAACGGTTTTGGTGAAGGCTCTGCCATTCAGCAGCTTGTAAACCAACTGAATGATCGCATTGAGCGTAAGAAAGACCGT TATACCTTTGTGGCCGTGGACTCTAACGAAGATGGCGTAACCGACGAGATGGACTCGATTGGTACTGACGTCATTACAAC AGGTGTTATCTACCGTAAGAAAGTGGTTAAGCTTAAAGACAGCCGTGTTATCGCGATGCCAAGCCAACAAGCGCCAGAAG TGTTAGACGATTCAGGCAAGGTGATTGAAGACGGTAAGAACTATCAACGTGACTCATTGGCGCCAACTTTTAAAGTCAAA GGCACCAAAGAGAAACTGACCGTTGCGATTAACCACTTTAAATCGAAAGGTTCTAAGTGTTGGGAAGATGCAGCCCCTGT AGAACAGGGCGGTCAAGGTGGCGTTGATGCCGACAAGCAAGGTTCATGTGAGAACTTCCGTGTTGCAGCTGCAGTTGCAC TGGGTGAAGCGCTAGATGGCATCAAAGGCCATAAAGTGATTCTGGGTGATATGAACTCGTACGGCATGGAAGACCCAATG CTGGTACTGACGGATTACTCTGAAGAGAAATACGGTAAGCAAATCAAAGCGGCGCGTAACACTTACATTGACGGTGTCGA GCAGTTTGGTGATAACGGTGCGGTGATTACCAAGAACTACGGCTACATTAATGCTGTGGCTCAAAAGCACCCAGACAGCT GGAGCTACTCATACAATGATGAGGTTGGCGCTTTGGATCACCTGTTGATCAGCGACAGCCTGAAAGACATGGTGGTGGAT GCGACTGACTGGCACATCAACGGCGGTGAATCGAAGTTGCTTGATTACAACGAAGAGTTCAAAGGTGATCTGCCGAAGTA CCAAGATCACTTCCGTTCATCGGATCATGATCCGGCAGTTCTTGAGCTTAAAGTCGGTGGTTCGTTTGGTTTCGGTGCAC TGATGTCATTGTTTGGCTTAGCAATGTGGCGTCGTCGTAAGTAA
Upstream 100 bases:
>100_bases TCTTGCCAACTGACTTATTCCTTTCATAAATAAACCTGATAGTTACCACAAAATACATGACTGCCCATAGATGGCAGTGA CTATAAATCGATGAACTTAG
Downstream 100 bases:
>100_bases TAAGGCTTTTCGAGTCATAATAAACCGCTACCTATAGGTAGCGGTTTATATTTTAGCTACTCATTGATACCAATCGTAGT AAATAACTGTTCACCCTAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Extracellular Nuclease; Nuclease; Endonuclease/Exonuclease/Phosphatase Family Protein; Endonuclease I; 5-Nucleotidase Domain Protein; 5-Nucleotidase Domain-Containing Protein; Extracellular Ribonuclease/Nuclease Fusion Protein; Extracellular Nuclease-Like Protein; Endonuclease/Exonuclease/Phosphatase Family; 5-Nucleotidase; PKD Domain-Containing Protein; Alkaline Phosphatase; Exported Nuclease; Endonuclease/Exonuclease/PhosphataseEndonuclease I; Outer Membrane Adhesin Like Proteiin; Extracellular Ribonuclease; LPXTG-Motif Cell Wall Anchor Domain Protein; Calcineurin-Like Phosphoesterase; Extracellular Nuclease-Like; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; DNA/RNA Non-Specific Endonuclease; Extracellular Nuclease/Phosphatase; 50S Ribosomal Type B; 5-Nucleotidase Family Protein
Number of amino acids: Translated: 867; Mature: 867
Protein sequence:
>867_residues MKRMALLHKPSLLAVAIGSLLTTSAHADLFISQYVEGGSYNKAVEIANNGDSSMNLDGYSLAKSANGNGSWGATLSLNGH VLAPGEVLVVAHTSASDEIKAAADILNASIANHNGDDPLAILNSDGSVHDVVGLMGDVDWGKDVTLVRAKQTPSATFDAS QWVSLPKDSIEGLGSLDNVELPDAFACTQDGSAPVFTTIQEIQGEGATSPFIDGYPYITDDEYFVKGVVSAVTTGITKGF YLQALEDDFNSSTSEGLFIHTNQSSSELAAGDVVCVKGKVQEYYSHTQLKVENNQWLKQGEQQAPEATVIEALDSDENFA ATLERHEGMLVKTTEALDMRVTRTFGYDYAGRRNNMVLAHERINMQPNQLSAAGSEDAKQQTKDNADRRLFVETDQKAGD GQVPFYPDFGRTDIDQDGSTEDYIRIDDTIVGLEGVLTYSYGEYRLVTTNQISAENFVRNDPRTDKPDMDEGDLRIATFN VLNYFNSPFGGDANQHGNNRGANTITEFEMQQEKIVNAILRLDADIIGLMEIENNGFGEGSAIQQLVNQLNDRIERKKDR YTFVAVDSNEDGVTDEMDSIGTDVITTGVIYRKKVVKLKDSRVIAMPSQQAPEVLDDSGKVIEDGKNYQRDSLAPTFKVK GTKEKLTVAINHFKSKGSKCWEDAAPVEQGGQGGVDADKQGSCENFRVAAAVALGEALDGIKGHKVILGDMNSYGMEDPM LVLTDYSEEKYGKQIKAARNTYIDGVEQFGDNGAVITKNYGYINAVAQKHPDSWSYSYNDEVGALDHLLISDSLKDMVVD ATDWHINGGESKLLDYNEEFKGDLPKYQDHFRSSDHDPAVLELKVGGSFGFGALMSLFGLAMWRRRK
Sequences:
>Translated_867_residues MKRMALLHKPSLLAVAIGSLLTTSAHADLFISQYVEGGSYNKAVEIANNGDSSMNLDGYSLAKSANGNGSWGATLSLNGH VLAPGEVLVVAHTSASDEIKAAADILNASIANHNGDDPLAILNSDGSVHDVVGLMGDVDWGKDVTLVRAKQTPSATFDAS QWVSLPKDSIEGLGSLDNVELPDAFACTQDGSAPVFTTIQEIQGEGATSPFIDGYPYITDDEYFVKGVVSAVTTGITKGF YLQALEDDFNSSTSEGLFIHTNQSSSELAAGDVVCVKGKVQEYYSHTQLKVENNQWLKQGEQQAPEATVIEALDSDENFA ATLERHEGMLVKTTEALDMRVTRTFGYDYAGRRNNMVLAHERINMQPNQLSAAGSEDAKQQTKDNADRRLFVETDQKAGD GQVPFYPDFGRTDIDQDGSTEDYIRIDDTIVGLEGVLTYSYGEYRLVTTNQISAENFVRNDPRTDKPDMDEGDLRIATFN VLNYFNSPFGGDANQHGNNRGANTITEFEMQQEKIVNAILRLDADIIGLMEIENNGFGEGSAIQQLVNQLNDRIERKKDR YTFVAVDSNEDGVTDEMDSIGTDVITTGVIYRKKVVKLKDSRVIAMPSQQAPEVLDDSGKVIEDGKNYQRDSLAPTFKVK GTKEKLTVAINHFKSKGSKCWEDAAPVEQGGQGGVDADKQGSCENFRVAAAVALGEALDGIKGHKVILGDMNSYGMEDPM LVLTDYSEEKYGKQIKAARNTYIDGVEQFGDNGAVITKNYGYINAVAQKHPDSWSYSYNDEVGALDHLLISDSLKDMVVD ATDWHINGGESKLLDYNEEFKGDLPKYQDHFRSSDHDPAVLELKVGGSFGFGALMSLFGLAMWRRRK >Mature_867_residues MKRMALLHKPSLLAVAIGSLLTTSAHADLFISQYVEGGSYNKAVEIANNGDSSMNLDGYSLAKSANGNGSWGATLSLNGH VLAPGEVLVVAHTSASDEIKAAADILNASIANHNGDDPLAILNSDGSVHDVVGLMGDVDWGKDVTLVRAKQTPSATFDAS QWVSLPKDSIEGLGSLDNVELPDAFACTQDGSAPVFTTIQEIQGEGATSPFIDGYPYITDDEYFVKGVVSAVTTGITKGF YLQALEDDFNSSTSEGLFIHTNQSSSELAAGDVVCVKGKVQEYYSHTQLKVENNQWLKQGEQQAPEATVIEALDSDENFA ATLERHEGMLVKTTEALDMRVTRTFGYDYAGRRNNMVLAHERINMQPNQLSAAGSEDAKQQTKDNADRRLFVETDQKAGD GQVPFYPDFGRTDIDQDGSTEDYIRIDDTIVGLEGVLTYSYGEYRLVTTNQISAENFVRNDPRTDKPDMDEGDLRIATFN VLNYFNSPFGGDANQHGNNRGANTITEFEMQQEKIVNAILRLDADIIGLMEIENNGFGEGSAIQQLVNQLNDRIERKKDR YTFVAVDSNEDGVTDEMDSIGTDVITTGVIYRKKVVKLKDSRVIAMPSQQAPEVLDDSGKVIEDGKNYQRDSLAPTFKVK GTKEKLTVAINHFKSKGSKCWEDAAPVEQGGQGGVDADKQGSCENFRVAAAVALGEALDGIKGHKVILGDMNSYGMEDPM LVLTDYSEEKYGKQIKAARNTYIDGVEQFGDNGAVITKNYGYINAVAQKHPDSWSYSYNDEVGALDHLLISDSLKDMVVD ATDWHINGGESKLLDYNEEFKGDLPKYQDHFRSSDHDPAVLELKVGGSFGFGALMSLFGLAMWRRRK
Specific function: Unknown
COG id: COG2374
COG function: function code R; Predicted extracellular nuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94695; Mature: 94695
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRMALLHKPSLLAVAIGSLLTTSAHADLFISQYVEGGSYNKAVEIANNGDSSMNLDGYS CCCCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHH LAKSANGNGSWGATLSLNGHVLAPGEVLVVAHTSASDEIKAAADILNASIANHNGDDPLA HHCCCCCCCCCEEEEEECCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEE ILNSDGSVHDVVGLMGDVDWGKDVTLVRAKQTPSATFDASQWVSLPKDSIEGLGSLDNVE EECCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHCCCHHHHHCCCCCCCCC LPDAFACTQDGSAPVFTTIQEIQGEGATSPFIDGYPYITDDEYFVKGVVSAVTTGITKGF CCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCC YLQALEDDFNSSTSEGLFIHTNQSSSELAAGDVVCVKGKVQEYYSHTQLKVENNQWLKQG EEEEHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEECHHHHHHCCCEEEECCCHHHHHH EQQAPEATVIEALDSDENFAATLERHEGMLVKTTEALDMRVTRTFGYDYAGRRNNMVLAH HHCCCCHHHHHHHCCCCCHHHHHHHCCCEEEEECHHHCEEEEEECCCCCCCCCCCEEEEE ERINMQPNQLSAAGSEDAKQQTKDNADRRLFVETDQKAGDGQVPFYPDFGRTDIDQDGST CCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC EDYIRIDDTIVGLEGVLTYSYGEYRLVTTNQISAENFVRNDPRTDKPDMDEGDLRIATFN CCEEEECCEEECCEEEEEEECCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCEEEEEEE VLNYFNSPFGGDANQHGNNRGANTITEFEMQQEKIVNAILRLDADIIGLMEIENNGFGEG HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC SAIQQLVNQLNDRIERKKDRYTFVAVDSNEDGVTDEMDSIGTDVITTGVIYRKKVVKLKD HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHEEECC SRVIAMPSQQAPEVLDDSGKVIEDGKNYQRDSLAPTFKVKGTKEKLTVAINHFKSKGSKC CEEEECCCCCCCHHHCCCCCEEECCCCCCCCCCCCEEEECCCHHEEEEEEEHHHCCCCHH WEDAAPVEQGGQGGVDADKQGSCENFRVAAAVALGEALDGIKGHKVILGDMNSYGMEDPM HHCCCCHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCE LVLTDYSEEKYGKQIKAARNTYIDGVEQFGDNGAVITKNYGYINAVAQKHPDSWSYSYND EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEHHHHCCCCCCCCCCCC EVGALDHLLISDSLKDMVVDATDWHINGGESKLLDYNEEFKGDLPKYQDHFRSSDHDPAV CCCHHHHHHHHHCHHHHEEECCCEEECCCCCCEECCCHHHCCCCCHHHHHHCCCCCCCEE LELKVGGSFGFGALMSLFGLAMWRRRK EEEEECCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKRMALLHKPSLLAVAIGSLLTTSAHADLFISQYVEGGSYNKAVEIANNGDSSMNLDGYS CCCCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHH LAKSANGNGSWGATLSLNGHVLAPGEVLVVAHTSASDEIKAAADILNASIANHNGDDPLA HHCCCCCCCCCEEEEEECCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEE ILNSDGSVHDVVGLMGDVDWGKDVTLVRAKQTPSATFDASQWVSLPKDSIEGLGSLDNVE EECCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHCCCHHHHHCCCCCCCCC LPDAFACTQDGSAPVFTTIQEIQGEGATSPFIDGYPYITDDEYFVKGVVSAVTTGITKGF CCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCC YLQALEDDFNSSTSEGLFIHTNQSSSELAAGDVVCVKGKVQEYYSHTQLKVENNQWLKQG EEEEHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEECHHHHHHCCCEEEECCCHHHHHH EQQAPEATVIEALDSDENFAATLERHEGMLVKTTEALDMRVTRTFGYDYAGRRNNMVLAH HHCCCCHHHHHHHCCCCCHHHHHHHCCCEEEEECHHHCEEEEEECCCCCCCCCCCEEEEE ERINMQPNQLSAAGSEDAKQQTKDNADRRLFVETDQKAGDGQVPFYPDFGRTDIDQDGST CCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC EDYIRIDDTIVGLEGVLTYSYGEYRLVTTNQISAENFVRNDPRTDKPDMDEGDLRIATFN CCEEEECCEEECCEEEEEEECCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCEEEEEEE VLNYFNSPFGGDANQHGNNRGANTITEFEMQQEKIVNAILRLDADIIGLMEIENNGFGEG HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC SAIQQLVNQLNDRIERKKDRYTFVAVDSNEDGVTDEMDSIGTDVITTGVIYRKKVVKLKD HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHEEECC SRVIAMPSQQAPEVLDDSGKVIEDGKNYQRDSLAPTFKVKGTKEKLTVAINHFKSKGSKC CEEEECCCCCCCHHHCCCCCEEECCCCCCCCCCCCEEEECCCHHEEEEEEEHHHCCCCHH WEDAAPVEQGGQGGVDADKQGSCENFRVAAAVALGEALDGIKGHKVILGDMNSYGMEDPM HHCCCCHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCE LVLTDYSEEKYGKQIKAARNTYIDGVEQFGDNGAVITKNYGYINAVAQKHPDSWSYSYND EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEHHHHCCCCCCCCCCCC EVGALDHLLISDSLKDMVVDATDWHINGGESKLLDYNEEFKGDLPKYQDHFRSSDHDPAV CCCHHHHHHHHHCHHHHEEECCCEEECCCCCCEECCCHHHCCCCCHHHHHHCCCCCCCEE LELKVGGSFGFGALMSLFGLAMWRRRK EEEEECCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA