| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710721
Identifier: 218710721
GI number: 218710721
Start: 2965835
End: 2966341
Strand: Direct
Name: 218710721
Synonym: VS_2804
Alternate gene names: NA
Gene position: 2965835-2966341 (Clockwise)
Preceding gene: 218710720
Following gene: 218710722
Centisome position: 89.89
GC content: 42.41
Gene sequence:
>507_bases ATGAAGAAAGTACTCATCACCGTTTTAAGCAGCCTTGCTGTGGTATCTTGCGCTAGTACTAGCGAGTCAGAACAAGTTAG TTCAACTTCTGATATTAACTATTCCCAACTATCACAAACAGCCCTTATGGCCGCTGTAGACATGTGGTCTCAAAAAAATG AAGCAACACCATTTACGAGCACCCTTGCTAATTCCCTAAGTGACAAAGCATCTGTAACAAATGAGCAAGCTATAGGTGGA GTAGGCTCCATGCTAGCTCTTGCCCAAAATACCCTTGATAACTTTGACAACCAAGAGCTCGAAATGCTTTTCCCTGGAAT GTCGACGCTTGATTCTACCGGTTTAAAGTCAGTATTGGACTCAAAAACATCTGTTGAAAATGCATTTTCAGGATTAGGTA TGGATTCATCAATGGTTGCGGCGTTTGCACCAATCATTATTCAAGGGCTAGAGTCACAAGGCGCAACAAGCGGTCTCGTT GATTCACTCGAAGCTATTTGGTTGTAA
Upstream 100 bases:
>100_bases TAGGTAAATTAGACTGAATTAGCTCAACGGCGATGTGACTACATCGCCGTTTTTCGTTTATAGTGAAAGAGTAAATTACT TTATTACTTAAGGACGAATA
Downstream 100 bases:
>100_bases TAACCAGTGATTAATAATTGATTTAAAATACTTAAAGGGCGCTTCGGTGCTCTTTTTTGTGCGCTGAACAAAAGAGATAC GAGATACGAGATACGAGATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 168; Mature: 168
Protein sequence:
>168_residues MKKVLITVLSSLAVVSCASTSESEQVSSTSDINYSQLSQTALMAAVDMWSQKNEATPFTSTLANSLSDKASVTNEQAIGG VGSMLALAQNTLDNFDNQELEMLFPGMSTLDSTGLKSVLDSKTSVENAFSGLGMDSSMVAAFAPIIIQGLESQGATSGLV DSLEAIWL
Sequences:
>Translated_168_residues MKKVLITVLSSLAVVSCASTSESEQVSSTSDINYSQLSQTALMAAVDMWSQKNEATPFTSTLANSLSDKASVTNEQAIGG VGSMLALAQNTLDNFDNQELEMLFPGMSTLDSTGLKSVLDSKTSVENAFSGLGMDSSMVAAFAPIIIQGLESQGATSGLV DSLEAIWL >Mature_168_residues MKKVLITVLSSLAVVSCASTSESEQVSSTSDINYSQLSQTALMAAVDMWSQKNEATPFTSTLANSLSDKASVTNEQAIGG VGSMLALAQNTLDNFDNQELEMLFPGMSTLDSTGLKSVLDSKTSVENAFSGLGMDSSMVAAFAPIIIQGLESQGATSGLV DSLEAIWL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17543; Mature: 17543
Theoretical pI: Translated: 3.74; Mature: 3.74
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVLITVLSSLAVVSCASTSESEQVSSTSDINYSQLSQTALMAAVDMWSQKNEATPFTS CHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHH TLANSLSDKASVTNEQAIGGVGSMLALAQNTLDNFDNQELEMLFPGMSTLDSTGLKSVLD HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHH SKTSVENAFSGLGMDSSMVAAFAPIIIQGLESQGATSGLVDSLEAIWL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC >Mature Secondary Structure MKKVLITVLSSLAVVSCASTSESEQVSSTSDINYSQLSQTALMAAVDMWSQKNEATPFTS CHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHH TLANSLSDKASVTNEQAIGGVGSMLALAQNTLDNFDNQELEMLFPGMSTLDSTGLKSVLD HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHH SKTSVENAFSGLGMDSSMVAAFAPIIIQGLESQGATSGLVDSLEAIWL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA