| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710715
Identifier: 218710715
GI number: 218710715
Start: 2962304
End: 2962870
Strand: Direct
Name: 218710715
Synonym: VS_2798
Alternate gene names: NA
Gene position: 2962304-2962870 (Clockwise)
Preceding gene: 218710714
Following gene: 218710716
Centisome position: 89.79
GC content: 43.21
Gene sequence:
>567_bases ATGCACACCTCTTTTATCGAACAACTACAAAGCTTTGACTTCTCTGAGAGTCAGATTGAATCTCTATTAGCTGTCGCGAA GCCGCTTGAACTGCCAACCCGACACATCCTGATCAATCAAGGTGAGATGGCGAATTCAATCTACTTTGTACTTGAAGGCT TATGCCACGCTTGTTATCTCACTAATGACGGTAAGCAATACAGCAAAGAGTTCTACTGGGAACAAGACTGGATCATCGGC TTTGAGAGTTTGATAAAGAACCAAGCGTCCCCTTACCTACTAGAAACGCTCACACCCATCACAATGTTAGAACTGCCAAT GAATGCGGTTATCGAGTGGCGTGCATCAAATAACCCTCTGTATTTAAAGCTGTTAGAAACTCAGCTGATGCACAAGGAAA ACAAAGAACGCTTTATGTTGCTTTATACCCCAGAGCAACGCTATCAACTTTTCTGCGAACATTACCCCGACCTTGAACAG CGCTTGAACGACAATCAAATTGCGGCTTACCTAGGTATAACCGCGATCAGCCTGAGCAGAATTAAAGGTCGAATTAACAA TAGTTAA
Upstream 100 bases:
>100_bases ATTATCTAGAACAGCACAGTCGACGCTGATTTAGCCTGCTCTGTACCTCTCCCCAAATAAGTGCGATGATCTCGGTACTT ATTTGGGTTAGGTTATTTTC
Downstream 100 bases:
>100_bases TGCCAACAATCATCGCACATAGTACATTCAGAGCATCGATAATCTCTGGATGTAAACATGATCACTTGGCACTCAATTCC CTTCTCTGAACTTTCAACAC
Product: cAMP-binding protein
Products: NA
Alternate protein names: Crp Family Transcriptional Regulator; CRP/FNR Family Transcriptional Regulator; Catabolite Gene Activator Protein; Crp/Fnr Family Transcriptional Regulator
Number of amino acids: Translated: 188; Mature: 188
Protein sequence:
>188_residues MHTSFIEQLQSFDFSESQIESLLAVAKPLELPTRHILINQGEMANSIYFVLEGLCHACYLTNDGKQYSKEFYWEQDWIIG FESLIKNQASPYLLETLTPITMLELPMNAVIEWRASNNPLYLKLLETQLMHKENKERFMLLYTPEQRYQLFCEHYPDLEQ RLNDNQIAAYLGITAISLSRIKGRINNS
Sequences:
>Translated_188_residues MHTSFIEQLQSFDFSESQIESLLAVAKPLELPTRHILINQGEMANSIYFVLEGLCHACYLTNDGKQYSKEFYWEQDWIIG FESLIKNQASPYLLETLTPITMLELPMNAVIEWRASNNPLYLKLLETQLMHKENKERFMLLYTPEQRYQLFCEHYPDLEQ RLNDNQIAAYLGITAISLSRIKGRINNS >Mature_188_residues MHTSFIEQLQSFDFSESQIESLLAVAKPLELPTRHILINQGEMANSIYFVLEGLCHACYLTNDGKQYSKEFYWEQDWIIG FESLIKNQASPYLLETLTPITMLELPMNAVIEWRASNNPLYLKLLETQLMHKENKERFMLLYTPEQRYQLFCEHYPDLEQ RLNDNQIAAYLGITAISLSRIKGRINNS
Specific function: Unknown
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22016; Mature: 22016
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: PS00888 CNMP_BINDING_1 ; PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHTSFIEQLQSFDFSESQIESLLAVAKPLELPTRHILINQGEMANSIYFVLEGLCHACYL CCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHEE TNDGKQYSKEFYWEQDWIIGFESLIKNQASPYLLETLTPITMLELPMNAVIEWRASNNPL CCCCHHHHHHHCCCCCHHCCHHHHHCCCCCCHHHHHCCCHHHHHCCCCCEEEEECCCCCE YLKLLETQLMHKENKERFMLLYTPEQRYQLFCEHYPDLEQRLNDNQIAAYLGITAISLSR EEEEHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHH IKGRINNS HHHCCCCC >Mature Secondary Structure MHTSFIEQLQSFDFSESQIESLLAVAKPLELPTRHILINQGEMANSIYFVLEGLCHACYL CCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHEE TNDGKQYSKEFYWEQDWIIGFESLIKNQASPYLLETLTPITMLELPMNAVIEWRASNNPL CCCCHHHHHHHCCCCCHHCCHHHHHCCCCCCHHHHHCCCHHHHHCCCCCEEEEECCCCCE YLKLLETQLMHKENKERFMLLYTPEQRYQLFCEHYPDLEQRLNDNQIAAYLGITAISLSR EEEEHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHH IKGRINNS HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA