| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is phnB [H]
Identifier: 218710645
GI number: 218710645
Start: 2893664
End: 2894107
Strand: Reverse
Name: phnB [H]
Synonym: VS_2724
Alternate gene names: 218710645
Gene position: 2894107-2893664 (Counterclockwise)
Preceding gene: 218710647
Following gene: 218710644
Centisome position: 87.72
GC content: 41.67
Gene sequence:
>444_bases TTGTCTATGTTTAAAGGACTAATAGAGGAGAAACATATGCTGACAGTAACCCCTTACTTGTTTTTTGATGGTCGTTGTAG TGAAGCGTTAGATTTTTATCATAAATGCTTTGGTGGTGTTGTTTTATCGAAGCAACTCTTTAGTGATGCCCCTCAGGTAA TAGAGGGGGCACAACCTAGTTGGGTTATGCACGCTGAGTTCGAAGCATTTGGTATGAAGCTCATGATGTCTGATGGCGTT AAAGCTAAAGAACTTGAAGGGAACAATCTGGCACTTTCCTTGGTTACCGAGGATACCGCGACTCAAGAGAAAATTTTTGA GAAGCTTAAACAAGGAGGGCGAATAATGACGCCACTCGCAGATACGTTTTGGGGCGCTAGATTTGGTAAAGTGGAAGATA AGTTCGGTATTCGTTGGATGGTGCATTGTGATTCTTTAAGTTGA
Upstream 100 bases:
>100_bases TATTGTGCCATTCCAAAATATTACCGTTTCCGTTCGTAATGCGATTCCTTAGTAAATTAATTATCTTAAATCAGAATGTT ATCTGTCATTCTCACGTCTA
Downstream 100 bases:
>100_bases ACCTGTGAAATTGGATAGTGAAATTCCCGTGTGGTTTTATTAGAATTATAAATATAGATTATTAATCAATATTATATAAA TATGGGCAGCATAAAGATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MSMFKGLIEEKHMLTVTPYLFFDGRCSEALDFYHKCFGGVVLSKQLFSDAPQVIEGAQPSWVMHAEFEAFGMKLMMSDGV KAKELEGNNLALSLVTEDTATQEKIFEKLKQGGRIMTPLADTFWGARFGKVEDKFGIRWMVHCDSLS
Sequences:
>Translated_147_residues MSMFKGLIEEKHMLTVTPYLFFDGRCSEALDFYHKCFGGVVLSKQLFSDAPQVIEGAQPSWVMHAEFEAFGMKLMMSDGV KAKELEGNNLALSLVTEDTATQEKIFEKLKQGGRIMTPLADTFWGARFGKVEDKFGIRWMVHCDSLS >Mature_146_residues SMFKGLIEEKHMLTVTPYLFFDGRCSEALDFYHKCFGGVVLSKQLFSDAPQVIEGAQPSWVMHAEFEAFGMKLMMSDGVK AKELEGNNLALSLVTEDTATQEKIFEKLKQGGRIMTPLADTFWGARFGKVEDKFGIRWMVHCDSLS
Specific function: Unknown
COG id: COG2764
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790546, Length=139, Percent_Identity=30.2158273381295, Blast_Score=79, Evalue=9e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16584; Mature: 16453
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 6.1 %Met (Translated Protein) 8.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 7.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMFKGLIEEKHMLTVTPYLFFDGRCSEALDFYHKCFGGVVLSKQLFSDAPQVIEGAQPS CCHHHHHHCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC WVMHAEFEAFGMKLMMSDGVKAKELEGNNLALSLVTEDTATQEKIFEKLKQGGRIMTPLA EEEEECHHHHCEEEEECCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHCCEEECCHH DTFWGARFGKVEDKFGIRWMVHCDSLS HHHHCCCCCCCCCCCCCEEEEEECCCC >Mature Secondary Structure SMFKGLIEEKHMLTVTPYLFFDGRCSEALDFYHKCFGGVVLSKQLFSDAPQVIEGAQPS CHHHHHHCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC WVMHAEFEAFGMKLMMSDGVKAKELEGNNLALSLVTEDTATQEKIFEKLKQGGRIMTPLA EEEEECHHHHCEEEEECCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHCCEEECCHH DTFWGARFGKVEDKFGIRWMVHCDSLS HHHHCCCCCCCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 7610040; 9278503 [H]