| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710546
Identifier: 218710546
GI number: 218710546
Start: 2782606
End: 2783406
Strand: Direct
Name: 218710546
Synonym: VS_2595
Alternate gene names: NA
Gene position: 2782606-2783406 (Clockwise)
Preceding gene: 218710545
Following gene: 218710549
Centisome position: 84.34
GC content: 40.07
Gene sequence:
>801_bases GTGTCAGAGCTAGTCACCAAATTAATGGATTTTGGGTTTACCAAAACCGATGCGCTTGTTTATATTAATTTACTCAAAAA TGGCCAATCCAGCGGATATAAAATCGCGAAAGAGATCTCTATCTCCCGCTCTTCTGTTTACTCGTCTATCGATAACCTTT ACGCCAATGGCTACATTTTCATGTCTGATGGCGACACTAAAGAGTACGAAGCTAAATCACCAGACTTGATTTTCAGCCAG ATAGAAAAAAAGACAGTCACCAATATTAATTTCCTTAAATCAGAATTATCTAAGATGATGCTGAAAGAGGAAAAAGAGTT CGTTTACAACGTATCGGGGTTCGACAACTTACTTCAAAAGGCCAAGGAAATCATTAATCAGGCAAATCTAGAAATTTACC TGAATACCGATTTTAACCTTGAGTTGTTTGGCAAAGAATTATGCGACGCCGTGGAACGTGGAGTACGAGTGATTGGCTTT TCATTCAACAAAATGGCGAGCCCACATGAAAAGATAGAACTACATTCGCGTTCTGAAAATGAAGAAACCGAATACCCTTC ACACCGCTTTATGTGCGTAGCCGATATGAAGCTCGCCCTCATGTTCTCACACCGTGAAGAAACCTTAGGTTTGTATGCAA ATAATCGCTTAATTGTAAAAATGATAGCAGAGCATATTCACAGCGATATTTACCTAACAGAATACGAGCGCCTGGCTCCG AATCAGCACCAACACGTCAGAGTAAATACGATTCACGAACAGCATAATGCTATGGTACTCGACGAGCTTAAGAAGCACTA A
Upstream 100 bases:
>100_bases TCTCATCGCTGAAAAAAATCACAACAATCATTTACGCTCGTCGTGACAAGAATGGTAACCTTAGAAGGAGAAGATATTGA ATAGTTTCAGAGGACAACCC
Downstream 100 bases:
>100_bases CTCAGCAGATCGAATTCAATAATAAGATACGAACAAAGGTCTAGTAATAGGCCTTTCGGGGAAAGAACTTTTAACGGGAA TCTATTTAATCCAAAGGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MSELVTKLMDFGFTKTDALVYINLLKNGQSSGYKIAKEISISRSSVYSSIDNLYANGYIFMSDGDTKEYEAKSPDLIFSQ IEKKTVTNINFLKSELSKMMLKEEKEFVYNVSGFDNLLQKAKEIINQANLEIYLNTDFNLELFGKELCDAVERGVRVIGF SFNKMASPHEKIELHSRSENEETEYPSHRFMCVADMKLALMFSHREETLGLYANNRLIVKMIAEHIHSDIYLTEYERLAP NQHQHVRVNTIHEQHNAMVLDELKKH
Sequences:
>Translated_266_residues MSELVTKLMDFGFTKTDALVYINLLKNGQSSGYKIAKEISISRSSVYSSIDNLYANGYIFMSDGDTKEYEAKSPDLIFSQ IEKKTVTNINFLKSELSKMMLKEEKEFVYNVSGFDNLLQKAKEIINQANLEIYLNTDFNLELFGKELCDAVERGVRVIGF SFNKMASPHEKIELHSRSENEETEYPSHRFMCVADMKLALMFSHREETLGLYANNRLIVKMIAEHIHSDIYLTEYERLAP NQHQHVRVNTIHEQHNAMVLDELKKH >Mature_265_residues SELVTKLMDFGFTKTDALVYINLLKNGQSSGYKIAKEISISRSSVYSSIDNLYANGYIFMSDGDTKEYEAKSPDLIFSQI EKKTVTNINFLKSELSKMMLKEEKEFVYNVSGFDNLLQKAKEIINQANLEIYLNTDFNLELFGKELCDAVERGVRVIGFS FNKMASPHEKIELHSRSENEETEYPSHRFMCVADMKLALMFSHREETLGLYANNRLIVKMIAEHIHSDIYLTEYERLAPN QHQHVRVNTIHEQHNAMVLDELKKH
Specific function: Unknown
COG id: COG1378
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30781; Mature: 30649
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELVTKLMDFGFTKTDALVYINLLKNGQSSGYKIAKEISISRSSVYSSIDNLYANGYIF CHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCEEE MSDGDTKEYEAKSPDLIFSQIEKKTVTNINFLKSELSKMMLKEEKEFVYNVSGFDNLLQK EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHH AKEIINQANLEIYLNTDFNLELFGKELCDAVERGVRVIGFSFNKMASPHEKIELHSRSEN HHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEHHHHCCCHHHEEECCCCCC EETEYPSHRFMCVADMKLALMFSHREETLGLYANNRLIVKMIAEHIHSDIYLTEYERLAP CCCCCCCCEEEEEECCEEEHHHHCCHHHEEEEECCCHHHHHHHHHHCCCEEEEHHHHHCC NQHQHVRVNTIHEQHNAMVLDELKKH CCCCEEEEEEEHHHHCHHHHHHHHCC >Mature Secondary Structure SELVTKLMDFGFTKTDALVYINLLKNGQSSGYKIAKEISISRSSVYSSIDNLYANGYIF HHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCEEE MSDGDTKEYEAKSPDLIFSQIEKKTVTNINFLKSELSKMMLKEEKEFVYNVSGFDNLLQK EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHH AKEIINQANLEIYLNTDFNLELFGKELCDAVERGVRVIGFSFNKMASPHEKIELHSRSEN HHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEHHHHCCCHHHEEECCCCCC EETEYPSHRFMCVADMKLALMFSHREETLGLYANNRLIVKMIAEHIHSDIYLTEYERLAP CCCCCCCCEEEEEECCEEEHHHHCCHHHEEEEECCCHHHHHHHHHHCCCEEEEHHHHHCC NQHQHVRVNTIHEQHNAMVLDELKKH CCCCEEEEEEEHHHHCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA