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The map label for this gene is csrA [H]

Identifier: 218710532

GI number: 218710532

Start: 2764819

End: 2765016

Strand: Reverse

Name: csrA [H]

Synonym: VS_2581

Alternate gene names: 218710532

Gene position: 2765016-2764819 (Counterclockwise)

Preceding gene: 218710533

Following gene: 218710531

Centisome position: 83.81

GC content: 43.43

Gene sequence:

>198_bases
ATGCTAATTTTGACTCGCCGCGTTGGCGAAACACTGATGATTGGTGACGAAGTAACAGTTACTGTACTAGGCGTTAAAGG
TAACCAAGTACGTATTGGTGTTAACGCACCTAAAGAAGTATCTGTTCACCGTGAAGAGATCTACATGCGCATTCAAGCTG
AAAAAGGTAATGGTAACGTTGCACCCGGCAACTACTAA

Upstream 100 bases:

>100_bases
TTGGTTAAATAAACTCAATCGATAGTTTACGAAAATATAACTTTTGTTGGATAATGCTCGCGTAGCTAGATAAATTTAGA
GATTACTCAAGGAGCAAAGA

Downstream 100 bases:

>100_bases
TACTTTTGCGTAGAGAAGAGGCTAGCATTGTTGCTAGCCTTTTTTGATCTTGGGGGAATGGAAATACGCATTTGAACATC
GATGGGGTGGTAACGGGGTA

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGNGNVAPGNY

Sequences:

>Translated_65_residues
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGNGNVAPGNY
>Mature_65_residues
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGNGNVAPGNY

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

Organism=Escherichia coli, GI1789047, Length=57, Percent_Identity=94.7368421052632, Blast_Score=107, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 7122; Mature: 7122

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGNGNV
CEEEECCCCCEEEECCCEEEEEEECCCCEEEEECCCCCCCEEEECEEEEEEEEECCCCCC
APGNY
CCCCC
>Mature Secondary Structure
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGNGNV
CEEEECCCCCEEEECCCEEEEEEECCCCEEEEECCCCCCCEEEECEEEEEEEEECCCCCC
APGNY
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA