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The map label for this gene is rimM

Identifier: 218710518

GI number: 218710518

Start: 2746994

End: 2747548

Strand: Reverse

Name: rimM

Synonym: VS_2557

Alternate gene names: 218710518

Gene position: 2747548-2746994 (Counterclockwise)

Preceding gene: 218710519

Following gene: 218710517

Centisome position: 83.28

GC content: 42.34

Gene sequence:

>555_bases
ATGTCGATGAAGGGTAAAGAAACGATGAGCGAGCAAAACGAAAGAATTGTTATGGGTAAACTTGGGTCTACCTATGGTAT
TCGTGGCTGGCTTAAAGTGTTCTCCTACACAGACAATGCTGAAAGCATATTTGATTACAGTCCTTGGTATTTAAAGCTAA
AGGGCGAGTGGGTTGAGTATAAAGTTGAAAGCTGGAAACGTCATGGTCAAGGCTATGTATGTAAGCTAGCGGGATTAGAT
GTACGTGAAGACGCGCAACTGATGACCAACTTTGAAATTGCTATTGACCCTGCTTCATTACCTGAATTGTCAGAAGATGA
ATTCTACTGGCGCGAATTGTTCGGTATGCAAGTTTTTACCACTAAAGGTTACAACCTTGGTGAGGTCACTGACCTATTAG
AAACTGGCTCGAACGATGTTCTAGTAATCAAAGCAAATCTTAAAGATGCTTTTGGCCAAAAGGAACGGTTAATCCCGTAC
CTTGAAGAGCAAGTGATCAAGAAAGTTGATCGCGAAGCTCGCCGGATCGAAGTTGACTGGGATCCTGGATTCTAA

Upstream 100 bases:

>100_bases
ACTGGGTTGGTCAAGGCGCATCTCTATCTGACCGCGTAGCTAAGCTAGTTAAAGACGCTCAAAAAGCGGCTTAATTCTTT
TTTAAAAAGAGAAATAGCTT

Downstream 100 bases:

>100_bases
CTCCAAATTACAGAGCGAGAGAACACATGTGGGTTGGCATTATTAGCCTTTTTCCTGAAATGTTCCGTTCTGTTACTGAT
TTTGGAGTAACAGGTCAAGC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSMKGKETMSEQNERIVMGKLGSTYGIRGWLKVFSYTDNAESIFDYSPWYLKLKGEWVEYKVESWKRHGQGYVCKLAGLD
VREDAQLMTNFEIAIDPASLPELSEDEFYWRELFGMQVFTTKGYNLGEVTDLLETGSNDVLVIKANLKDAFGQKERLIPY
LEEQVIKKVDREARRIEVDWDPGF

Sequences:

>Translated_184_residues
MSMKGKETMSEQNERIVMGKLGSTYGIRGWLKVFSYTDNAESIFDYSPWYLKLKGEWVEYKVESWKRHGQGYVCKLAGLD
VREDAQLMTNFEIAIDPASLPELSEDEFYWRELFGMQVFTTKGYNLGEVTDLLETGSNDVLVIKANLKDAFGQKERLIPY
LEEQVIKKVDREARRIEVDWDPGF
>Mature_183_residues
SMKGKETMSEQNERIVMGKLGSTYGIRGWLKVFSYTDNAESIFDYSPWYLKLKGEWVEYKVESWKRHGQGYVCKLAGLDV
REDAQLMTNFEIAIDPASLPELSEDEFYWRELFGMQVFTTKGYNLGEVTDLLETGSNDVLVIKANLKDAFGQKERLIPYL
EEQVIKKVDREARRIEVDWDPGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=59.3406593406593, Blast_Score=237, Evalue=3e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_VIBSL (B7VK28)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002418139.1
- ProteinModelPortal:   B7VK28
- SMR:   B7VK28
- GeneID:   7162087
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_2557
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 21375; Mature: 21243

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMKGKETMSEQNERIVMGKLGSTYGIRGWLKVFSYTDNAESIFDYSPWYLKLKGEWVEY
CCCCCCHHHHCCCCEEEEECCCCCCCHHHHHHEEECCCCCCHHCCCCCEEEEEECCEEEE
KVESWKRHGQGYVCKLAGLDVREDAQLMTNFEIAIDPASLPELSEDEFYWRELFGMQVFT
EHHHHHHCCCCEEEEEECCCCCCCHHHHEEEEEEECCCCCCCCCCCHHHHHHHHCEEEEE
TKGYNLGEVTDLLETGSNDVLVIKANLKDAFGQKERLIPYLEEQVIKKVDREARRIEVDW
ECCCCHHHHHHHHHCCCCCEEEEEECCCHHCCCCCCCCHHHHHHHHHHHCCHHHEEEEEC
DPGF
CCCC
>Mature Secondary Structure 
SMKGKETMSEQNERIVMGKLGSTYGIRGWLKVFSYTDNAESIFDYSPWYLKLKGEWVEY
CCCCCHHHHCCCCEEEEECCCCCCCHHHHHHEEECCCCCCHHCCCCCEEEEEECCEEEE
KVESWKRHGQGYVCKLAGLDVREDAQLMTNFEIAIDPASLPELSEDEFYWRELFGMQVFT
EHHHHHHCCCCEEEEEECCCCCCCHHHHEEEEEEECCCCCCCCCCCHHHHHHHHCEEEEE
TKGYNLGEVTDLLETGSNDVLVIKANLKDAFGQKERLIPYLEEQVIKKVDREARRIEVDW
ECCCCHHHHHHHHHCCCCCEEEEEECCCHHCCCCCCCCHHHHHHHHHHHCCHHHEEEEEC
DPGF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA