Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 218710459

GI number: 218710459

Start: 2671132

End: 2672421

Strand: Direct

Name: yebA [H]

Synonym: VS_2498

Alternate gene names: 218710459

Gene position: 2671132-2672421 (Clockwise)

Preceding gene: 218710456

Following gene: 218710463

Centisome position: 80.96

GC content: 45.89

Gene sequence:

>1290_bases
ATGTTGTCTATTTTTGCACGCCTTCCCATTTTGCACCGGGCATTTATCGCATTTTTTAGTGCCGTAATTTTTATCGCTAT
TTTCTTACTCCCCGACGTCAACAGCTTACGTGACGATACGGGAGCTTTAGTCGTTGGAAAACACTACCCACTGACGATCA
GTGCATCAGCACTTGTTAGCTCAAGTGACGCACCACCGACGGCAGTACTCAAATGGGAGAAATACACCGTTCGCTCTGGC
GAAAGCACCTCTGTTTTATTTGAACGTATTGGCCTTTCATACCGTTTACTGATCACTCTACTCAATACCAACAACGATAT
TAAAAAGCAGCTGTCCAATCTAAGACCTGGCGACGTATTACAATTCGGCTTTGATGAAAACAACGACCTTATTCAGTTGA
AGCGACAACTTAGTGCGTTTGAAAGCTTCAAGATCACTAAGTCTGGCGATTCATTCTCCTCTAGCTTCGACAAAAAGGAA
GTGGCCTACCAATACAACTATGCCGAAGCCAACATCACGTCTAACTTCTGGAACGCCGGCGTCAATGCAGGCCTAACTGC
AAACCAAATTATGGAACTGGCGGGCATCTTCGGTTGGGATATCGACTTTGCGTTGGATATTCGCAACAACGACAGCTTTA
AGATTTTGTACCAAGAGAAAGTCGTTGAAGGCGAAGTGATTGGTCGCGGCAAGATCATGGCGGCAGTATTCAAAAACCAA
GGTGATTCATTTACCGCGGTATTAGATGATAGAAGCGGCAACTACTTCGATGAAAATGGTCGTGCCATGAAGAAAGCCTT
CTTGCGCTCACCGATTGATTTTCGCCGTGTAACATCGAACTTTAACCCTCGTAGAAAACACCCAGTAACCGGTAAGGTTC
GAGCTCACCGAGGCACCGACTACGCAGCCCCTGTTGGCACACCTATCTGGGCAGCCGGTGACGGTATTGTTCAGAAATCG
GGTTACAACCAATTCAATGGTAACTACGTGTTCATTCGCCACAGCAACACCTATATCACTAAATACTTGCATATGAAGCG
ACGTATGGTGAAAACAGGTCAGCGCGTAAAACAAGGCCAAACCATTGGTACTTTGGGCGGTACAGGCCGTGTGACTGGCC
CGCACTTACACTATGAATTCTTGGTCAATGGCGTACATAAAAATGCGCGAACCGTGAAATTACCGCAATCTAAGTCGTTA
ACCGGTAAAGCAAAAGCAACCTTTATTGCCAACTCAGAGATTCGACTGAATAACCTTGAGCGATACGGCCAGTTACTAGC
GACTAATTAG

Upstream 100 bases:

>100_bases
ATATAATAATTAGACATCTTACTTGAATAGCGATGTATTTTGAAACCAGTTACACTATTCCGTCGTCTATTTTCATAATA
TTTACAGAACGAACCGGAAC

Downstream 100 bases:

>100_bases
GCAACTAGATACCAATTAGGTTAAGAGCCCTATAAACCAACGAAAAGAGCGCCCACCAAGGCGCTCTTTTTTATGTTCAT
CGAACCACTGTATCTACTAT

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MLSIFARLPILHRAFIAFFSAVIFIAIFLLPDVNSLRDDTGALVVGKHYPLTISASALVSSSDAPPTAVLKWEKYTVRSG
ESTSVLFERIGLSYRLLITLLNTNNDIKKQLSNLRPGDVLQFGFDENNDLIQLKRQLSAFESFKITKSGDSFSSSFDKKE
VAYQYNYAEANITSNFWNAGVNAGLTANQIMELAGIFGWDIDFALDIRNNDSFKILYQEKVVEGEVIGRGKIMAAVFKNQ
GDSFTAVLDDRSGNYFDENGRAMKKAFLRSPIDFRRVTSNFNPRRKHPVTGKVRAHRGTDYAAPVGTPIWAAGDGIVQKS
GYNQFNGNYVFIRHSNTYITKYLHMKRRMVKTGQRVKQGQTIGTLGGTGRVTGPHLHYEFLVNGVHKNARTVKLPQSKSL
TGKAKATFIANSEIRLNNLERYGQLLATN

Sequences:

>Translated_429_residues
MLSIFARLPILHRAFIAFFSAVIFIAIFLLPDVNSLRDDTGALVVGKHYPLTISASALVSSSDAPPTAVLKWEKYTVRSG
ESTSVLFERIGLSYRLLITLLNTNNDIKKQLSNLRPGDVLQFGFDENNDLIQLKRQLSAFESFKITKSGDSFSSSFDKKE
VAYQYNYAEANITSNFWNAGVNAGLTANQIMELAGIFGWDIDFALDIRNNDSFKILYQEKVVEGEVIGRGKIMAAVFKNQ
GDSFTAVLDDRSGNYFDENGRAMKKAFLRSPIDFRRVTSNFNPRRKHPVTGKVRAHRGTDYAAPVGTPIWAAGDGIVQKS
GYNQFNGNYVFIRHSNTYITKYLHMKRRMVKTGQRVKQGQTIGTLGGTGRVTGPHLHYEFLVNGVHKNARTVKLPQSKSL
TGKAKATFIANSEIRLNNLERYGQLLATN
>Mature_429_residues
MLSIFARLPILHRAFIAFFSAVIFIAIFLLPDVNSLRDDTGALVVGKHYPLTISASALVSSSDAPPTAVLKWEKYTVRSG
ESTSVLFERIGLSYRLLITLLNTNNDIKKQLSNLRPGDVLQFGFDENNDLIQLKRQLSAFESFKITKSGDSFSSSFDKKE
VAYQYNYAEANITSNFWNAGVNAGLTANQIMELAGIFGWDIDFALDIRNNDSFKILYQEKVVEGEVIGRGKIMAAVFKNQ
GDSFTAVLDDRSGNYFDENGRAMKKAFLRSPIDFRRVTSNFNPRRKHPVTGKVRAHRGTDYAAPVGTPIWAAGDGIVQKS
GYNQFNGNYVFIRHSNTYITKYLHMKRRMVKTGQRVKQGQTIGTLGGTGRVTGPHLHYEFLVNGVHKNARTVKLPQSKSL
TGKAKATFIANSEIRLNNLERYGQLLATN

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=342, Percent_Identity=31.8713450292398, Blast_Score=199, Evalue=4e-52,
Organism=Escherichia coli, GI87082174, Length=103, Percent_Identity=42.7184466019417, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 47902; Mature: 47902

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIFARLPILHRAFIAFFSAVIFIAIFLLPDVNSLRDDTGALVVGKHYPLTISASALVS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEECCCCEEEEHHHHCC
SSDAPPTAVLKWEKYTVRSGESTSVLFERIGLSYRLLITLLNTNNDIKKQLSNLRPGDVL
CCCCCCEEEEEEEEEEECCCCCHHHHHHHHCCCEEEEEEEECCCCHHHHHHHCCCCCCEE
QFGFDENNDLIQLKRQLSAFESFKITKSGDSFSSSFDKKEVAYQYNYAEANITSNFWNAG
EECCCCCCHHHHHHHHHHHHHHEEEEECCCCHHCCCCCCCEEEEEEEEECCCCCHHHCCC
VNAGLTANQIMELAGIFGWDIDFALDIRNNDSFKILYQEKVVEGEVIGRGKIMAAVFKNQ
CCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEECCCCEEECCCEEEEEEECCC
GDSFTAVLDDRSGNYFDENGRAMKKAFLRSPIDFRRVTSNFNPRRKHPVTGKVRAHRGTD
CCEEEEEEECCCCCEECCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCC
YAAPVGTPIWAAGDGIVQKSGYNQFNGNYVFIRHSNTYITKYLHMKRRMVKTGQRVKQGQ
CCCCCCCCEEECCCCEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
TIGTLGGTGRVTGPHLHYEFLVNGVHKNARTVKLPQSKSLTGKAKATFIANSEIRLNNLE
EEEECCCCCCCCCCCEEHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEECCCEEECCHH
RYGQLLATN
HHHHHHCCC
>Mature Secondary Structure
MLSIFARLPILHRAFIAFFSAVIFIAIFLLPDVNSLRDDTGALVVGKHYPLTISASALVS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEECCCCEEEEHHHHCC
SSDAPPTAVLKWEKYTVRSGESTSVLFERIGLSYRLLITLLNTNNDIKKQLSNLRPGDVL
CCCCCCEEEEEEEEEEECCCCCHHHHHHHHCCCEEEEEEEECCCCHHHHHHHCCCCCCEE
QFGFDENNDLIQLKRQLSAFESFKITKSGDSFSSSFDKKEVAYQYNYAEANITSNFWNAG
EECCCCCCHHHHHHHHHHHHHHEEEEECCCCHHCCCCCCCEEEEEEEEECCCCCHHHCCC
VNAGLTANQIMELAGIFGWDIDFALDIRNNDSFKILYQEKVVEGEVIGRGKIMAAVFKNQ
CCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEECCCCEEECCCEEEEEEECCC
GDSFTAVLDDRSGNYFDENGRAMKKAFLRSPIDFRRVTSNFNPRRKHPVTGKVRAHRGTD
CCEEEEEEECCCCCEECCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCC
YAAPVGTPIWAAGDGIVQKSGYNQFNGNYVFIRHSNTYITKYLHMKRRMVKTGQRVKQGQ
CCCCCCCCEEECCCCEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
TIGTLGGTGRVTGPHLHYEFLVNGVHKNARTVKLPQSKSLTGKAKATFIANSEIRLNNLE
EEEECCCCCCCCCCCEEHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEECCCEEECCHH
RYGQLLATN
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]